Variant report
| Variant | rs61903125 |
|---|---|
| Chromosome Location | chr11:106490782-106490783 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10502075 | 1.00[ASN][1000 genomes] |
| rs10890565 | 1.00[ASN][1000 genomes] |
| rs11211852 | 1.00[ASN][1000 genomes] |
| rs11211853 | 1.00[ASN][1000 genomes] |
| rs11211854 | 1.00[ASN][1000 genomes] |
| rs11211856 | 1.00[ASN][1000 genomes] |
| rs11211860 | 1.00[ASN][1000 genomes] |
| rs11211861 | 1.00[ASN][1000 genomes] |
| rs11211863 | 1.00[ASN][1000 genomes] |
| rs11211864 | 1.00[ASN][1000 genomes] |
| rs11211865 | 1.00[ASN][1000 genomes] |
| rs11211866 | 1.00[ASN][1000 genomes] |
| rs11211869 | 1.00[ASN][1000 genomes] |
| rs12360850 | 1.00[ASN][1000 genomes] |
| rs12362289 | 1.00[ASN][1000 genomes] |
| rs12365648 | 1.00[ASN][1000 genomes] |
| rs17563648 | 1.00[ASN][1000 genomes] |
| rs17563662 | 1.00[ASN][1000 genomes] |
| rs17649054 | 1.00[ASN][1000 genomes] |
| rs61903121 | 1.00[ASN][1000 genomes] |
| rs61903143 | 1.00[ASN][1000 genomes] |
| rs61903144 | 1.00[ASN][1000 genomes] |
| rs61903145 | 1.00[ASN][1000 genomes] |
| rs61903146 | 1.00[ASN][1000 genomes] |
| rs61903149 | 1.00[ASN][1000 genomes] |
| rs61903150 | 1.00[ASN][1000 genomes] |
| rs61903152 | 1.00[ASN][1000 genomes] |
| rs9645655 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038836 | chr11:106459674-106514773 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1054602 | chr11:106460454-106514773 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1052457 | chr11:106477599-106507197 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv468865 | chr11:106485489-106527673 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv556227 | chr11:106485489-106527673 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106489800-106491800 | Enhancers | Placenta Amnion | Placenta Amnion |
