Variant report

Variant	rs61907272
Chromosome Location	chr11:85511762-85511763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85394543..85396055-chr11:85509684..85512654,2	MCF-7	breast:
2	chr11:85504991..85507109-chr11:85510444..85513172,2	MCF-7	breast:
3	chr11:85433629..85436258-chr11:85509690..85512364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137501	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11234410	0.90[ASN][1000 genomes]
rs1151152	0.89[ASN][1000 genomes]
rs11604141	0.90[ASN][1000 genomes]
rs11604178	0.90[ASN][1000 genomes]
rs12792050	0.89[ASN][1000 genomes]
rs1445513	0.90[ASN][1000 genomes]
rs17817179	0.97[ASN][1000 genomes]
rs497158	0.97[ASN][1000 genomes]
rs510948	0.84[ASN][1000 genomes]
rs520629	0.90[ASN][1000 genomes]
rs521764	0.91[ASN][1000 genomes]
rs537604	0.84[ASN][1000 genomes]
rs543995	0.91[ASN][1000 genomes]
rs565494	0.88[ASN][1000 genomes]
rs592712	0.80[ASN][1000 genomes]
rs631104	0.84[ASN][1000 genomes]
rs639688	0.89[ASN][1000 genomes]
rs644558	0.89[ASN][1000 genomes]
rs650970	0.82[ASN][1000 genomes]
rs667080	0.97[ASN][1000 genomes]
rs683903	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv2762927	chr11:85468051-85559618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1052737	chr11:85477084-85554914	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv541115	chr11:85477084-85554914	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1049630	chr11:85486866-85535123	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85491800-85517800	Weak transcription	NHLF	lung
2	chr11:85499200-85517200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:85499800-85517400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:85503200-85511800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:85503400-85513200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:85503400-85516400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:85506200-85514400	Weak transcription	Primary T cells from cord blood	blood
8	chr11:85507200-85512600	Weak transcription	Fetal Kidney	kidney
9	chr11:85509400-85512400	Enhancers	Stomach Mucosa	stomach
10	chr11:85509600-85512000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:85509600-85512200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:85509800-85512000	Enhancers	Colonic Mucosa	Colon
13	chr11:85509800-85512800	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:85509800-85520000	Weak transcription	HSMM	muscle
15	chr11:85510000-85511800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr11:85510000-85518000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr11:85510600-85511800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:85510800-85511800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:85510800-85512200	Enhancers	Small Intestine	intestine
20	chr11:85510800-85516600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:85510800-85520200	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:85511200-85511800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:85511400-85512600	Weak transcription	Fetal Intestine Large	intestine
24	chr11:85511600-85512000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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