Variant report

Variant	rs61908160
Chromosome Location	chr11:107328712-107328713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:296)
CpG islands
(count:122)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:296 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr11:107328221-107329162	HCT-116	colon:	n/a	n/a
2	EP300	chr11:107328350-107328787	HepG2	liver:	n/a	chr11:107328609-107328616
3	POLR2A	chr11:107328017-107329055	GM15510	blood:	n/a	n/a
4	POLR2A	chr11:107328216-107328812	K562	blood:	n/a	n/a
5	POLR2A	chr11:107328208-107328990	PANC-1	pancreas:	n/a	n/a
6	GABPA	chr11:107328284-107328936	SK-N-SH	brain:	n/a	chr11:107328649-107328660
7	ELF1	chr11:107328457-107328836	K562	blood:	n/a	n/a
8	GTF2F1	chr11:107328285-107329066	Hela-S3	cervix:	n/a	n/a
9	TCF12	chr11:107328214-107329050	A549	lung:	n/a	chr11:107328979-107328986
10	SIN3AK20	chr11:107328324-107328733	PANC-1	pancreas:	n/a	n/a
11	FOXA1	chr11:107328331-107328817	HepG2	liver:	n/a	chr11:107328592-107328604
12	YY1	chr11:107328235-107328812	SK-N-SH_RA	brain:	n/a	n/a
13	POLR2A	chr11:107328237-107328803	H1-neurons	neurons:	n/a	n/a
14	POLR2A	chr11:107328224-107329006	GM12878	blood:	n/a	n/a
15	POLR2A	chr11:107328175-107329068	GM12878	blood:	n/a	n/a
16	YY1	chr11:107328059-107328883	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr11:107328024-107328993	K562	blood:	n/a	n/a
18	YY1	chr11:107327836-107329046	SK-N-SH	brain:	n/a	n/a
19	CBX3	chr11:107328281-107328798	K562	blood:	n/a	n/a
20	TAF1	chr11:107328208-107328874	GM12878	blood:	n/a	n/a
21	ELF1	chr11:107328206-107329164	GM12878	blood:	n/a	n/a
22	POU2F2	chr11:107328237-107328851	GM12878	blood:	n/a	n/a
23	CCNT2	chr11:107328454-107328790	K562	blood:	n/a	n/a
24	RCOR1	chr11:107327948-107329118	K562	blood:	n/a	n/a
25	YY1	chr11:107328250-107328728	GM12878	blood:	n/a	n/a
26	EP300	chr11:107328295-107328764	GM12878	blood:	n/a	chr11:107328609-107328616
27	REST	chr11:107328010-107329012	H1-neurons	neurons:	n/a	n/a
28	REST	chr11:107328066-107329007	HL-60	blood:	n/a	n/a
29	TAF1	chr11:107327939-107328773	K562	blood:	n/a	n/a
30	ELF1	chr11:107328354-107329023	HepG2	liver:	n/a	n/a
31	REST	chr11:107328199-107328863	A549	lung:	n/a	n/a
32	POLR2A	chr11:107328332-107329052	HEK293	kidney:	n/a	n/a
33	MAFK	chr11:107328378-107329034	K562	blood:	n/a	n/a
34	ATF3	chr11:107328394-107328774	H1-hESC	embryonic stem cell:	n/a	n/a
35	MAX	chr11:107328253-107329009	SK-N-SH	brain:	n/a	n/a
36	POLR2A	chr11:107328302-107328920	HepG2	liver:	n/a	n/a
37	TAF1	chr11:107328379-107328798	H1-neurons	neurons:	n/a	n/a
38	STAT3	chr11:107328353-107328771	MCF10A-Er-Src	breast:	n/a	chr11:107328377-107328385 chr11:107328355-107328367
39	MAX	chr11:107328082-107328791	K562	blood:	n/a	n/a
40	MYBL2	chr11:107328098-107328812	HepG2	liver:	n/a	n/a
41	TAF7	chr11:107328060-107328969	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr11:107328399-107328823	HUVEC	blood vessel:	n/a	n/a
43	POLR2A	chr11:107327922-107329078	Raji	blood:	n/a	n/a
44	TAF1	chr11:107328248-107328764	GM12892	blood:	n/a	n/a
45	ZBTB33	chr11:107328291-107328773	SK-N-SH	brain:	n/a	n/a
46	E2F4	chr11:107327779-107328801	MCF10A-Er-Src	breast:	n/a	n/a
47	POLR2A	chr11:107328343-107328968	SK-N-MC	brain:	n/a	n/a
48	YY1	chr11:107328225-107328761	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr11:107327943-107329117	GM12878	blood:	n/a	n/a
50	NR2F2	chr11:107328366-107328882	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:107328671-107328721	AG09319	gingival:	n/a
2	chr11:107328690-107328740	HCT-116	colon:	n/a
3	chr11:107328671-107328721	SK-N-SH	brain:	n/a
4	chr11:107328690-107328740	HPAEpiC	pulmonary alveolar:	n/a
5	chr11:107328671-107328721	ovcar-3	ovarian:	n/a
6	chr11:107328671-107328721	NH-A	brain:	n/a
7	chr11:107328671-107328721	IMR90	lung:	fetal
8	chr11:107328671-107328721	GM12892	blood:	n/a
9	chr11:107328690-107328740	HMEC	breast:	n/a
10	chr11:107328671-107328721	Jurkat	blood:	n/a
11	chr11:107328690-107328740	HEK293	kidney:	embryo
12	chr11:107328690-107328740	SKMC	muscle:	n/a
13	chr11:107328690-107328740	HRE	kidney:	n/a
14	chr11:107328671-107328721	NT2-D1	testis:	n/a
15	chr11:107328690-107328740	SK-N-SH	brain:	n/a
16	chr11:107328690-107328740	HRPEpiC	eye:	n/a
17	chr11:107328671-107328721	GM06990	blood:	n/a
18	chr11:107328690-107328740	PrEC	prostate:	n/a
19	chr11:107328671-107328721	BE2_C	brain:	n/a
20	chr11:107328690-107328740	Jurkat	blood:	n/a
21	chr11:107328671-107328721	AG04449	skin:	fetal
22	chr11:107328690-107328740	BE2_C	brain:	n/a
23	chr11:107328690-107328740	PANC-1	pancreas:	n/a
24	chr11:107328690-107328740	Hepatocyte	liver:	n/a
25	chr11:107328690-107328740	SK-N-MC	brain:	n/a
26	chr11:107328671-107328721	GM12878	blood:	n/a
27	chr11:107328671-107328721	HCF	heart:	n/a
28	chr11:107328671-107328721	BJ	skin:	n/a
29	chr11:107328690-107328740	U87	brain:	n/a
30	chr11:107328690-107328740	BJ	skin:	n/a
31	chr11:107328690-107328740	HCF	heart:	n/a
32	chr11:107328671-107328721	HEEpiC	esophagus:	n/a
33	chr11:107328690-107328740	ECC-1	luminal epithelium:	n/a
34	chr11:107328671-107328721	RPTEC	kidney:	n/a
35	chr11:107328690-107328740	A549	lung:	n/a
36	chr11:107328690-107328740	K562	blood:	n/a
37	chr11:107328690-107328740	HRCEpiC	kidney:	n/a
38	chr11:107328671-107328721	HepG2	liver:	n/a
39	chr11:107328690-107328740	GM12891	blood:	n/a
40	chr11:107328671-107328721	K562	blood:	n/a
41	chr11:107328671-107328721	AoSMC	blood vessel:	n/a
42	chr11:107328690-107328740	ovcar-3	ovarian:	n/a
43	chr11:107328690-107328740	AG09319	gingival:	n/a
44	chr11:107328690-107328740	HCM	heart:	n/a
45	chr11:107328671-107328721	NB4	blood:	n/a
46	chr11:107328671-107328721	HPAEpiC	pulmonary alveolar:	n/a
47	chr11:107328671-107328721	HRE	kidney:	n/a
48	chr11:107328671-107328721	PrEC	prostate:	n/a
49	chr11:107328690-107328740	RPTEC	kidney:	n/a
50	chr11:107328671-107328721	MCF10A-Er-Src	breast:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:107311896..107313858-chr11:107327138..107329604,2	K562	blood:
2	chr1:28908024..28908798-chr11:107328064..107328889,2	HCT-116	colon:
3	chr11:107328376..107329012-chr20:10654520..10655433,2	HCT-116	colon:

No data

Variant related genes	Relation type
CWF19L2	TF binding region
CWF19L2	CpG island
ENSG00000152404	Chromatin interaction
ENSG00000197989	Chromatin interaction
ENSG00000101384	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10400258	0.81[EUR][1000 genomes]
rs11212242	0.81[EUR][1000 genomes]
rs12271885	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12281043	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284352	0.81[AFR][1000 genomes]
rs34358550	0.83[EUR][1000 genomes]
rs4753805	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61906057	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61906058	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv898375	chr11:107299631-107365191	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898377	chr11:107316499-107354312	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv2757476	chr11:107324276-107344568	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv2759864	chr11:107324276-107344568	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107326800-107329000	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr11:107326800-107329200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:107326800-107329200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:107326800-107329200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:107326800-107329400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:107326800-107329400	Active TSS	GM12878-XiMat	blood
7	chr11:107327000-107329000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:107327000-107329200	Active TSS	K562	blood
9	chr11:107327200-107329200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:107327400-107329000	Active TSS	HSMM	muscle
11	chr11:107327400-107329200	Active TSS	H1 Cell Line	embryonic stem cell
12	chr11:107327400-107329200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:107327400-107329200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:107327400-107329200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:107327400-107329200	Active TSS	Psoas Muscle	Psoas
16	chr11:107327400-107329200	Active TSS	A549	lung
17	chr11:107327400-107329400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:107327600-107328800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr11:107327600-107328800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:107327600-107328800	Active TSS	Fetal Kidney	kidney
21	chr11:107327600-107329000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:107327600-107329000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:107327600-107329000	Active TSS	Brain Hippocampus Middle	brain
24	chr11:107327600-107329000	Active TSS	Rectal Smooth Muscle	rectum
25	chr11:107327600-107329000	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr11:107327600-107329000	Active TSS	NHEK	skin
27	chr11:107327600-107329200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:107327600-107329200	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr11:107327600-107329200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:107327600-107329200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:107327600-107329200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:107327600-107329200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:107327600-107329200	Active TSS	Fetal Brain Male	brain
34	chr11:107327600-107329200	Active TSS	Fetal Muscle Trunk	muscle
35	chr11:107327600-107329200	Active TSS	Ovary	ovary
36	chr11:107327600-107329200	Active TSS	Thymus	Thymus
37	chr11:107327600-107329200	Active TSS	NHDF-Ad	bronchial
38	chr11:107327600-107329200	Active TSS	NHLF	lung
39	chr11:107327600-107329400	Active TSS	Right Atrium	heart
40	chr11:107327800-107328800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:107327800-107328800	Active TSS	Fetal Heart	heart
42	chr11:107327800-107328800	Active TSS	Placenta	Placenta
43	chr11:107327800-107329000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr11:107327800-107329000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:107327800-107329000	Active TSS	H9 Cell Line	embryonic stem cell
46	chr11:107327800-107329000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:107327800-107329200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:107327800-107329200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:107327800-107329200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:107327800-107329200	Active TSS	Aorta	Aorta

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