Variant report
| Variant | rs61909645 |
|---|---|
| Chromosome Location | chr12:4704429-4704430 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11608546 | 0.84[EUR][1000 genomes] |
| rs11608895 | 0.88[EUR][1000 genomes] |
| rs11614297 | 0.88[EUR][1000 genomes] |
| rs11615397 | 0.84[EUR][1000 genomes] |
| rs12318978 | 0.92[EUR][1000 genomes] |
| rs34392018 | 0.88[EUR][1000 genomes] |
| rs35827006 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55929927 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58057028 | 1.00[EUR][1000 genomes] |
| rs58588078 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58934582 | 1.00[EUR][1000 genomes] |
| rs60139771 | 1.00[EUR][1000 genomes] |
| rs61909641 | 0.96[EUR][1000 genomes] |
| rs61909644 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61909646 | 0.84[EUR][1000 genomes] |
| rs61909647 | 0.96[EUR][1000 genomes] |
| rs61909651 | 1.00[EUR][1000 genomes] |
| rs61909652 | 0.96[EUR][1000 genomes] |
| rs61909653 | 0.96[EUR][1000 genomes] |
| rs61909657 | 0.92[EUR][1000 genomes] |
| rs61909658 | 0.88[EUR][1000 genomes] |
| rs61909659 | 0.88[EUR][1000 genomes] |
| rs61909960 | 0.84[EUR][1000 genomes] |
| rs61909961 | 0.84[EUR][1000 genomes] |
| rs61909963 | 0.84[EUR][1000 genomes] |
| rs61911360 | 0.88[EUR][1000 genomes] |
| rs61911366 | 0.84[EUR][1000 genomes] |
| rs61911367 | 0.84[EUR][1000 genomes] |
| rs61911368 | 0.84[EUR][1000 genomes] |
| rs61911369 | 0.84[EUR][1000 genomes] |
| rs61911370 | 0.84[EUR][1000 genomes] |
| rs74060058 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7971891 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv557123 | chr12:4436632-4736569 | Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv832318 | chr12:4655799-4875837 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:4702800-4708400 | Strong transcription | Primary B cells from cord blood | blood |
| 2 | chr12:4704000-4705000 | Strong transcription | Primary B cells from peripheral blood | blood |
| 3 | chr12:4704000-4713200 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
