Variant report

Variant	rs61913469
Chromosome Location	chr12:10060228-10060229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11610998	0.84[ASN][1000 genomes]
rs11612095	0.84[ASN][1000 genomes]
rs17204888	0.84[ASN][1000 genomes]
rs61913470	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913473	0.84[ASN][1000 genomes]
rs61913476	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10056400-10061800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:10057000-10061800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:10058200-10061400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr12:10058400-10060600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr12:10058400-10060600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:10058600-10060400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:10058600-10060600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr12:10058600-10061600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:10058800-10060600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr12:10058800-10060800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:10059200-10060400	Weak transcription	Fetal Thymus	thymus
12	chr12:10059600-10061000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr12:10059800-10061000	Enhancers	Primary T cells from cord blood	blood
14	chr12:10060000-10061000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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