Variant report

Variant	rs61914740
Chromosome Location	chr11:48100968-48100969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:48099180..48102059-chr11:48102708..48105162,2	K562	blood:
2	chr11:48098800..48100999-chr11:48104120..48106582,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10501322	1.00[EUR][1000 genomes]
rs10838796	0.90[EUR][1000 genomes]
rs11039509	0.90[EUR][1000 genomes]
rs11819788	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11824256	0.96[AFR][1000 genomes]
rs11828823	0.96[AFR][1000 genomes]
rs12289488	0.90[EUR][1000 genomes]
rs12289583	0.90[EUR][1000 genomes]
rs1566735	1.00[EUR][1000 genomes]
rs1569171	0.90[EUR][1000 genomes]
rs17727563	1.00[EUR][1000 genomes]
rs17727629	1.00[EUR][1000 genomes]
rs17727725	1.00[EUR][1000 genomes]
rs17789481	1.00[EUR][1000 genomes]
rs17789547	1.00[EUR][1000 genomes]
rs17789571	1.00[EUR][1000 genomes]
rs17789583	1.00[EUR][1000 genomes]
rs55670897	0.90[EUR][1000 genomes]
rs55709369	0.97[EUR][1000 genomes]
rs56143324	1.00[EUR][1000 genomes]
rs56817081	0.90[EUR][1000 genomes]
rs57066976	0.90[EUR][1000 genomes]
rs61914720	0.90[EUR][1000 genomes]
rs61914721	0.90[EUR][1000 genomes]
rs61914722	0.83[EUR][1000 genomes]
rs61914723	0.90[EUR][1000 genomes]
rs61914725	0.90[EUR][1000 genomes]
rs61914726	0.90[EUR][1000 genomes]
rs61914727	0.84[EUR][1000 genomes]
rs61914729	0.90[EUR][1000 genomes]
rs61914730	0.90[EUR][1000 genomes]
rs61914731	0.90[EUR][1000 genomes]
rs61914732	0.90[EUR][1000 genomes]
rs61914733	0.90[EUR][1000 genomes]
rs61914736	0.97[EUR][1000 genomes]
rs61914738	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61914739	1.00[EUR][1000 genomes]
rs61915869	1.00[EUR][1000 genomes]
rs61915871	1.00[EUR][1000 genomes]
rs61915872	1.00[EUR][1000 genomes]
rs61915873	1.00[EUR][1000 genomes]
rs61915874	0.97[EUR][1000 genomes]
rs61915875	1.00[EUR][1000 genomes]
rs61915876	1.00[EUR][1000 genomes]
rs61915877	1.00[EUR][1000 genomes]
rs61915878	1.00[EUR][1000 genomes]
rs61915879	1.00[EUR][1000 genomes]
rs61915880	1.00[EUR][1000 genomes]
rs61915881	1.00[EUR][1000 genomes]
rs61915882	1.00[EUR][1000 genomes]
rs61915883	1.00[EUR][1000 genomes]
rs61915913	1.00[EUR][1000 genomes]
rs61915914	1.00[EUR][1000 genomes]
rs61915915	1.00[EUR][1000 genomes]
rs61915918	1.00[EUR][1000 genomes]
rs7106202	1.00[EUR][1000 genomes]
rs7111553	0.90[EUR][1000 genomes]
rs73464874	0.88[AFR][1000 genomes]
rs73464876	0.90[EUR][1000 genomes]
rs73466843	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1047490	chr11:47916708-48388686	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1044266	chr11:47929586-48276132	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv541038	chr11:47929586-48276132	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv870381	chr11:47989434-48142648	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	esv3396029	chr11:47993857-48241494	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv897327	chr11:48004369-48911660	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	nsv869124	chr11:48014539-48783113	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv1051805	chr11:48016488-48378048	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv428573	chr11:48032457-48152344	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
15	nsv897328	chr11:48043053-48901553	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv897329	chr11:48052676-48319974	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv1048554	chr11:48062861-48388686	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
18	nsv1038210	chr11:48068862-48388686	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
19	nsv1052076	chr11:48077864-48702549	ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
20	nsv1053528	chr11:48086151-48125731	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
21	nsv869354	chr11:48088580-48783113	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
22	nsv1045734	chr11:48089315-48893207	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
23	nsv1036541	chr11:48091589-48116032	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:48079200-48102800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:48081800-48101600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:48086000-48102000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:48086000-48109200	Weak transcription	Fetal Intestine Large	intestine
5	chr11:48086200-48101000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:48086200-48101000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:48086200-48102000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:48086200-48114400	Weak transcription	Hela-S3	cervix
9	chr11:48086400-48101000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:48086800-48102800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:48089000-48102200	Weak transcription	NHDF-Ad	bronchial
12	chr11:48089000-48105800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:48089200-48108000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:48089400-48102400	Weak transcription	HSMM	muscle
15	chr11:48090400-48103000	Weak transcription	Thymus	Thymus
16	chr11:48090600-48101800	Weak transcription	Primary T cells from cord blood	blood
17	chr11:48091800-48101800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:48092400-48109400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:48094000-48103600	Weak transcription	Small Intestine	intestine
20	chr11:48095200-48114200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:48096400-48111200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:48096600-48101400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:48096600-48101400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:48096600-48101800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:48096600-48102800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:48097200-48109800	Weak transcription	Colonic Mucosa	Colon
27	chr11:48097400-48101600	Weak transcription	Liver	Liver
28	chr11:48097600-48109600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:48097600-48110000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:48099000-48102200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:48099000-48102600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:48099000-48102800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:48099200-48101800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:48099200-48102000	Weak transcription	Right Ventricle	heart
35	chr11:48099200-48102200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:48099200-48102200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:48099200-48102800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:48099200-48103000	Enhancers	Fetal Brain Male	brain
39	chr11:48099200-48104600	Enhancers	Brain Hippocampus Middle	brain
40	chr11:48099200-48105800	Weak transcription	Fetal Intestine Small	intestine
41	chr11:48099400-48101200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:48099400-48101800	Weak transcription	NH-A	brain
43	chr11:48099400-48102000	Weak transcription	HSMMtube	muscle
44	chr11:48099400-48102000	Weak transcription	Osteobl	bone
45	chr11:48099400-48102200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:48099600-48103000	Weak transcription	HepG2	liver
47	chr11:48099800-48104000	Enhancers	Brain Angular Gyrus	brain
48	chr11:48100000-48101600	Enhancers	Fetal Brain Female	brain
49	chr11:48100000-48103600	Enhancers	Brain Substantia Nigra	brain
50	chr11:48100000-48104600	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links