Variant report

Variant	rs61915614
Chromosome Location	chr7:26216465-26216466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:26216458-26217819	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26212776..26215168-chr7:26216411..26218758,2	MCF-7	breast:
2	chr7:26212943..26215260-chr7:26216372..26218499,2	MCF-7	breast:

Variant related genes	Relation type
NFE2L3	TF binding region
ENSG00000273237	TF binding region
ENSG00000273237	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1035812	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1035813	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10732751	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10748040	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10784518	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10784528	0.82[ASN][1000 genomes]
rs10784536	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12306060	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1365763	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1365764	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1365766	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1427271	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1427272	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1427273	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17461964	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2162472	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2404836	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2896978	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3789330	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3943893	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4767972	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4768231	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4768232	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4768233	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4768234	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4768235	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7137437	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7294952	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7294958	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7296657	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7306545	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7306684	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7308626	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7311247	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7312497	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7313525	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7313895	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7314455	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7314863	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7954061	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7956787	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7956898	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7957151	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7962116	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7963697	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7963987	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7971919	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7976724	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs890575	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919175	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
2	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
4	nsv1034358	chr7:26142380-26219559	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26196600-26222000	Weak transcription	Left Ventricle	heart
2	chr7:26198800-26222000	Weak transcription	Spleen	Spleen
3	chr7:26199400-26222000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:26199400-26230200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:26200000-26227200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:26206600-26219600	Weak transcription	K562	blood
7	chr7:26206600-26220600	Weak transcription	Right Atrium	heart
8	chr7:26206600-26227600	Weak transcription	Esophagus	oesophagus
9	chr7:26206800-26226000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:26207000-26220200	Weak transcription	Right Ventricle	heart
11	chr7:26207000-26226800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:26207000-26227400	Weak transcription	Gastric	stomach
13	chr7:26207000-26227600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:26207000-26228000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:26207200-26218000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:26207200-26224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:26207200-26227000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:26207200-26228200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:26207400-26219800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr7:26207400-26221800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:26207400-26224800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:26207400-26227800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:26207600-26218400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:26207600-26227000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:26207600-26227400	Weak transcription	Primary T cells from cord blood	blood
26	chr7:26207800-26218000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:26207800-26218000	Weak transcription	Fetal Intestine Small	intestine
28	chr7:26207800-26223200	Weak transcription	Fetal Thymus	thymus
29	chr7:26208000-26226000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:26208000-26227400	Weak transcription	Brain Substantia Nigra	brain
31	chr7:26208600-26222400	Weak transcription	Lung	lung
32	chr7:26208800-26227600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:26209000-26222000	Weak transcription	Placenta	Placenta
34	chr7:26209200-26218000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:26209200-26218000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:26209200-26226000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:26209600-26218000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:26209600-26219600	Weak transcription	Brain Hippocampus Middle	brain
39	chr7:26210200-26217600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:26210200-26227000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:26210200-26227000	Weak transcription	Small Intestine	intestine
42	chr7:26210400-26222000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:26210600-26218000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr7:26210800-26218000	Weak transcription	Pancreas	Pancrea
45	chr7:26210800-26223800	Weak transcription	GM12878-XiMat	blood
46	chr7:26210800-26224800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:26210800-26226000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:26211000-26217600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:26211000-26218000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:26211000-26218200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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