Variant report

Variant	rs61916462
Chromosome Location	chr11:101619255-101619256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11225068	1.00[ASN][1000 genomes]
rs11602852	1.00[ASN][1000 genomes]
rs12797150	1.00[ASN][1000 genomes]
rs12804060	1.00[ASN][1000 genomes]
rs17759114	1.00[ASN][1000 genomes]
rs34605548	1.00[ASN][1000 genomes]
rs61916496	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044223	chr11:101586478-101626839	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101613200-101619400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101616800-101619600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:101618400-101619400	Enhancers	Fetal Lung	lung
4	chr11:101618400-101619800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:101618400-101620400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:101618400-101620400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:101618400-101620400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:101618800-101620400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:101619000-101619400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:101619000-101619400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:101619000-101619400	Enhancers	NHDF-Ad	bronchial
12	chr11:101619000-101619600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:101619000-101619800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:101619000-101620400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:101619000-101621200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:101619200-101619600	Enhancers	Ovary	ovary
17	chr11:101619200-101619800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr11:101619200-101619800	Enhancers	Fetal Muscle Leg	muscle
19	chr11:101619200-101620000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:101619200-101620000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:101619200-101620000	Enhancers	A549	lung
22	chr11:101619200-101620400	Enhancers	Fetal Kidney	kidney
23	chr11:101619200-101620400	Enhancers	Fetal Stomach	stomach
24	chr11:101619200-101620600	Active TSS	NHLF	lung

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