Variant report

Variant	rs61919104
Chromosome Location	chr12:10548188-10548189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:97)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:97 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:10548176-10548670	MCF10A-Er-Src	breast:	n/a	n/a
2	TFAP2A	chr12:10548134-10548726	Hela-S3	cervix:	n/a	n/a
3	EP300	chr12:10547799-10548619	GM12878	blood:	n/a	n/a
4	ARID3A	chr12:10548121-10548681	HepG2	liver:	n/a	n/a
5	FOXA2	chr12:10548154-10548666	A549	lung:	n/a	n/a
6	SPI1	chr12:10547891-10548288	GM12878	blood:	n/a	n/a
7	FOXM1	chr12:10547901-10548593	GM12878	blood:	n/a	n/a
8	EP300	chr12:10547891-10548484	GM12878	blood:	n/a	n/a
9	ELK4	chr12:10548120-10548659	Hela-S3	cervix:	n/a	chr12:10548498-10548509
10	STAT3	chr12:10547837-10548559	GM12878	blood:	n/a	chr12:10548045-10548052
11	POLR2A	chr12:10547837-10548688	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr12:10548126-10549206	PANC-1	pancreas:	n/a	n/a
13	MXI1	chr12:10547846-10548575	GM12878	blood:	n/a	n/a
14	SPI1	chr12:10547866-10548273	GM12891	blood:	n/a	n/a
15	SP1	chr12:10548094-10548791	A549	lung:	n/a	n/a
16	MTA3	chr12:10547806-10548446	GM12878	blood:	n/a	n/a
17	STAT3	chr12:10548053-10548674	MCF10A-Er-Src	breast:	n/a	n/a
18	TCF12	chr12:10547995-10548941	A549	lung:	n/a	n/a
19	MAX	chr12:10548108-10548765	A549	lung:	n/a	n/a
20	POLR2A	chr12:10547891-10548663	HL-60	blood:	n/a	n/a
21	NFIC	chr12:10547864-10548579	GM12878	blood:	n/a	n/a
22	POLR2A	chr12:10546789-10549289	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chr12:10548092-10548602	IMR90	lung:	n/a	n/a
24	MEF2A	chr12:10547819-10548336	GM12878	blood:	n/a	n/a
25	TCF7L2	chr12:10546921-10548707	Hela-S3	cervix:	n/a	n/a
26	STAT3	chr12:10548051-10548631	MCF10A-Er-Src	breast:	n/a	n/a
27	POLR2A	chr12:10548105-10548691	PANC-1	pancreas:	n/a	n/a
28	RCOR1	chr12:10547864-10548629	GM12878	blood:	n/a	n/a
29	SPI1	chr12:10547953-10548323	GM12891	blood:	n/a	n/a
30	MAZ	chr12:10548045-10548584	HepG2	liver:	n/a	n/a
31	FOXM1	chr12:10547866-10548452	GM12878	blood:	n/a	n/a
32	ATF2	chr12:10547858-10548386	GM12878	blood:	n/a	n/a
33	MYC	chr12:10547997-10548686	MCF10A-Er-Src	breast:	n/a	n/a
34	FOS	chr12:10548026-10548633	MCF10A-Er-Src	breast:	n/a	n/a
35	FOXA2	chr12:10547998-10548627	HepG2	liver:	n/a	n/a
36	CHD1	chr12:10547832-10548581	GM12878	blood:	n/a	n/a
37	KAP1	chr12:10547944-10548582	HEK293	kidney:	n/a	n/a
38	MAX	chr12:10547825-10548317	GM12878	blood:	n/a	n/a
39	ELF1	chr12:10548130-10548679	A549	lung:	n/a	n/a
40	POLR2A	chr12:10547045-10549197	Hela-S3	cervix:	n/a	n/a
41	BCLAF1	chr12:10547846-10548369	GM12878	blood:	n/a	n/a
42	POLR2A	chr12:10547065-10549170	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr12:10546405-10556419	Hela-S3	cervix:	n/a	n/a
44	SPI1	chr12:10547894-10548240	HL-60	blood:	n/a	n/a
45	FOSL2	chr12:10548154-10548713	A549	lung:	n/a	n/a
46	TFAP2C	chr12:10548134-10548750	Hela-S3	cervix:	n/a	n/a
47	RUNX3	chr12:10547851-10548650	GM12878	blood:	n/a	n/a
48	POLR2A	chr12:10547030-10548844	Hela-S3	cervix:	n/a	n/a
49	RFX5	chr12:10547955-10548686	Hela-S3	cervix:	n/a	n/a
50	ELK1	chr12:10547870-10548226	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:10527378..10530229-chr12:10546803..10548399,2	K562	blood:
2	chr12:10548044..10548696-chr9:117267865..117268396,2	Hela-S3	cervix:
3	chr12:10547736..10550018-chr12:10555798..10557891,2	MCF-7	breast:

No data

Variant related genes	Relation type
KLRK1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv898759	chr12:10454556-10583365	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv898760	chr12:10492982-10564329	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv898761	chr12:10496724-10564329	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1036390	chr12:10496724-10596720	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv557455	chr12:10508975-10560957	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv898762	chr12:10509383-10564329	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv898763	chr12:10514528-10603670	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv8914	chr12:10532300-10662676	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv557456	chr12:10532326-10698255	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv898764	chr12:10537269-10698255	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv898765	chr12:10537269-10701992	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv430461	chr12:10539815-10554033	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv557457	chr12:10545925-10698255	Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv557458	chr12:10546140-10698255	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1051292	chr12:10547900-10596720	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10534800-10548800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:10542000-10549200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:10544200-10548200	Enhancers	Primary T cells from cord blood	blood
4	chr12:10544400-10548200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:10544400-10550800	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:10544600-10548800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:10544600-10549000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:10545400-10548200	Enhancers	NHEK	skin
9	chr12:10545400-10549000	Enhancers	HMEC	breast
10	chr12:10545600-10548400	Weak transcription	Esophagus	oesophagus
11	chr12:10546800-10548400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:10547000-10548200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:10547000-10548200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr12:10547000-10548600	Enhancers	Fetal Thymus	thymus
15	chr12:10547200-10548600	Enhancers	Placenta	Placenta
16	chr12:10547200-10548600	Enhancers	Thymus	Thymus
17	chr12:10547200-10549000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:10547600-10548200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr12:10547600-10548200	Enhancers	Stomach Smooth Muscle	stomach
20	chr12:10547600-10548400	Flanking Active TSS	Hela-S3	cervix
21	chr12:10547600-10548600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr12:10547600-10548600	Enhancers	Fetal Intestine Small	intestine
23	chr12:10547600-10549000	Enhancers	Primary hematopoietic stem cells	blood
24	chr12:10547800-10548200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:10547800-10548200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:10547800-10548200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:10547800-10548200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr12:10547800-10548200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr12:10547800-10548200	Enhancers	Osteobl	bone
30	chr12:10547800-10548400	Enhancers	Stomach Mucosa	stomach
31	chr12:10547800-10548400	Enhancers	HepG2	liver
32	chr12:10547800-10548600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:10547800-10548600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr12:10547800-10548600	Enhancers	Brain Angular Gyrus	brain
35	chr12:10547800-10548600	Enhancers	Fetal Intestine Large	intestine
36	chr12:10547800-10548600	Flanking Active TSS	GM12878-XiMat	blood
37	chr12:10547800-10548800	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr12:10547800-10548800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:10547800-10548800	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr12:10547800-10548800	Enhancers	HSMM	muscle
41	chr12:10547800-10548800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr12:10547800-10559400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr12:10548000-10548200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr12:10548000-10548200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr12:10548000-10548200	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr12:10548000-10548200	Enhancers	Rectal Smooth Muscle	rectum
47	chr12:10548000-10548200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr12:10548000-10548200	Enhancers	NH-A	brain
49	chr12:10548000-10548400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr12:10548000-10548400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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