Variant report

Variant	rs61919240
Chromosome Location	chr12:8831954-8831955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8831240..8834725-chr12:9101135..9103936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003056	Chromatin interaction
ENSG00000139187	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11046704	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11046759	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11608477	0.89[EUR][1000 genomes]
rs7132012	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73053848	0.85[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61919240	RIMKLB	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8824000-8833600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:8828000-8833400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:8828400-8833800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:8828400-8840400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:8828600-8834000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:8828800-8833600	Weak transcription	Fetal Intestine Small	intestine
8	chr12:8828800-8833800	Weak transcription	Fetal Kidney	kidney
9	chr12:8828800-8837200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:8829400-8834000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:8829600-8834800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:8830000-8832000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr12:8830000-8833800	Weak transcription	Fetal Thymus	thymus
14	chr12:8830000-8834000	Weak transcription	Right Atrium	heart
15	chr12:8830000-8834200	Enhancers	Placenta	Placenta
16	chr12:8830000-8840400	Weak transcription	Primary T cells from cord blood	blood
17	chr12:8830200-8832600	Weak transcription	HUVEC	blood vessel
18	chr12:8830200-8833800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:8830800-8833800	Enhancers	NHEK	skin
20	chr12:8830800-8834000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:8831000-8832800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:8831000-8834600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:8831200-8833200	Enhancers	Hela-S3	cervix
24	chr12:8831200-8833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:8831400-8833600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:8831400-8834200	Enhancers	HMEC	breast
27	chr12:8831600-8832400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr12:8831600-8832400	Enhancers	NH-A	brain
29	chr12:8831600-8833200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr12:8831800-8833600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr12:8831800-8833600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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