Variant report

Variant	rs61921143
Chromosome Location	chr12:30689614-30689615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12581495	0.97[ASN][1000 genomes]
rs17484785	0.94[ASN][1000 genomes]
rs4930931	0.97[ASN][1000 genomes]
rs4930932	0.97[ASN][1000 genomes]
rs58828540	0.96[ASN][1000 genomes]
rs61921074	0.83[ASN][1000 genomes]
rs61921140	0.97[ASN][1000 genomes]
rs61921141	0.99[ASN][1000 genomes]
rs61921142	0.99[ASN][1000 genomes]
rs73287331	0.94[ASN][1000 genomes]
rs9668330	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv469192	chr12:30678625-30707035	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv558029	chr12:30678625-30707035	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv976029	chr12:30687283-30702050	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30686800-30690200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr12:30688600-30689800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:30689400-30689800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr12:30689400-30689800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:30689400-30689800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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