Variant report
| Variant | rs61921903 |
|---|---|
| Chromosome Location | chr12:62848870-62848871 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62848675..62850421-chr12:62858765..62861480,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000061987 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10506442 | 0.88[ASN][1000 genomes] |
| rs12423344 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17097966 | 0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17120341 | 0.81[AMR][1000 genomes] |
| rs4763173 | 0.81[AMR][1000 genomes] |
| rs57715507 | 0.96[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs59191400 | 0.81[AMR][1000 genomes] |
| rs61556144 | 0.96[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs61919479 | 0.81[AMR][1000 genomes] |
| rs61919485 | 0.81[AMR][1000 genomes] |
| rs61921904 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs61921910 | 0.83[AMR][1000 genomes] |
| rs61921911 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs61921913 | 0.81[AMR][1000 genomes] |
| rs61921914 | 0.81[AMR][1000 genomes] |
| rs7136696 | 0.81[AMR][1000 genomes] |
| rs7307786 | 0.81[AMR][1000 genomes] |
| rs7965328 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530690 | chr12:62678463-62999462 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| 2 | nsv899158 | chr12:62783967-62937259 | Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv899159 | chr12:62783967-62945245 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv821671 | chr12:62794304-63007964 | Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
