Variant report

Variant	rs61937984
Chromosome Location	chr12:119513323-119513324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10082877	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10774484	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10849624	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10849625	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10849626	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11064646	0.80[AMR][1000 genomes]
rs11064653	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12369571	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1525955	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1525956	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2030830	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2030831	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2204497	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34513652	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4331170	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4767764	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4767766	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4767767	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4767768	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6490232	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6490233	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7297117	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7315409	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7315433	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7316677	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7952877	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7956868	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7957820	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7959061	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7966721	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7973439	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7976360	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7979364	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs955181	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs956186	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3327170	chr12:119511269-119515867	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3346572	chr12:119513198-119513417	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119506600-119513400	Weak transcription	Fetal Brain Male	brain
2	chr12:119510000-119519800	Weak transcription	Fetal Brain Female	brain
3	chr12:119513200-119513800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:119513200-119513800	ZNF genes & repeats	Pancreas	Pancrea
5	chr12:119513200-119514000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr12:119513200-119514000	ZNF genes & repeats	Fetal Kidney	kidney

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