Variant report

Variant	rs61938013
Chromosome Location	chr12:119527194-119527195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61938014	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61938015	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61938018	0.82[EUR][1000 genomes]
rs7294450	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119521000-119535600	Weak transcription	Fetal Brain Female	brain
2	chr12:119521200-119537400	Weak transcription	Brain Germinal Matrix	brain
3	chr12:119525000-119529000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:119525800-119528600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:119525800-119528800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:119526000-119529600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:119526200-119528200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr12:119526400-119528800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:119526400-119530400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:119526600-119527200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr12:119526600-119527200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr12:119526600-119528800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:119526600-119529400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:119526800-119527800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:119527000-119527200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr12:119527000-119527400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:119527000-119527800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:119527000-119528200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr12:119527000-119528200	Weak transcription	Right Atrium	heart
20	chr12:119527000-119528600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr12:119527000-119528800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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