Variant report
| Variant | rs61939529 |
|---|---|
| Chromosome Location | chr12:119781795-119781796 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11608731 | 1.00[ASN][1000 genomes] |
| rs11610334 | 1.00[ASN][1000 genomes] |
| rs11610654 | 1.00[ASN][1000 genomes] |
| rs11611983 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11615885 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35039180 | 1.00[ASN][1000 genomes] |
| rs56974423 | 1.00[ASN][1000 genomes] |
| rs61938066 | 1.00[ASN][1000 genomes] |
| rs61938069 | 1.00[ASN][1000 genomes] |
| rs61938070 | 1.00[ASN][1000 genomes] |
| rs61938071 | 1.00[ASN][1000 genomes] |
| rs61938072 | 1.00[ASN][1000 genomes] |
| rs61938075 | 1.00[ASN][1000 genomes] |
| rs61939525 | 1.00[ASN][1000 genomes] |
| rs61939527 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61939533 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047036 | chr12:119477583-119992640 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv832528 | chr12:119638211-119793401 | Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv899552 | chr12:119733874-119814623 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:119781000-119784200 | Weak transcription | Fetal Brain Female | brain |
