Variant report

Variant	rs61939706
Chromosome Location	chr12:7741191-7741192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000207708	Chromatin interaction
ENSG00000207713	Chromatin interaction
ENSG00000126749	Chromatin interaction
ENSG00000257084	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs35250512	1.00[AFR][1000 genomes]
rs61753204	1.00[AMR][1000 genomes]
rs61936901	1.00[AFR][1000 genomes]
rs61936983	1.00[AMR][1000 genomes]
rs61936985	1.00[AMR][1000 genomes]
rs61937006	1.00[AMR][1000 genomes]
rs61937008	1.00[AMR][1000 genomes]
rs61937009	1.00[AMR][1000 genomes]
rs61937013	1.00[AMR][1000 genomes]
rs61937014	1.00[AMR][1000 genomes]
rs61937016	1.00[AMR][1000 genomes]
rs61937024	1.00[AMR][1000 genomes]
rs61939662	1.00[AFR][1000 genomes]
rs7301812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041155	chr12:7655137-7821891	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045650	chr12:7655137-7824995	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv557270	chr12:7727544-7801532	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv468990	chr12:7729433-7801532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv557271	chr12:7729433-7801532	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv826213	chr12:7730932-7830644	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7740800-7741800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:7740800-7741800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr12:7741000-7741600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:7741000-7741800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:7741000-7741800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:7741000-7741800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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