Variant report

Variant	rs61942136
Chromosome Location	chr12:106649224-106649225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11112908	0.83[ASN][1000 genomes]
rs11112915	0.83[ASN][1000 genomes]
rs1215753	0.90[ASN][1000 genomes]
rs12227822	0.94[ASN][1000 genomes]
rs12231439	0.94[ASN][1000 genomes]
rs12320181	0.92[ASN][1000 genomes]
rs2649705	0.92[ASN][1000 genomes]
rs2704895	0.92[ASN][1000 genomes]
rs2704896	0.92[ASN][1000 genomes]
rs2704898	0.92[ASN][1000 genomes]
rs2936701	0.92[ASN][1000 genomes]
rs3088113	0.82[ASN][1000 genomes]
rs3741882	0.96[ASN][1000 genomes]
rs3782699	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799917	chr12:106637876-106649988	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1834434	chr12:106637876-106649988	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3423758	chr12:106646369-106649583	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv6114	chr12:106646456-106649695	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106644200-106649800	Weak transcription	Fetal Heart	heart
2	chr12:106644400-106649400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr12:106646200-106658800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:106647800-106649600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:106647800-106649800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr12:106647800-106649800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:106648400-106649400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:106648600-106649600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:106649000-106649600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:106649200-106649600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links