Variant report
| Variant | rs61942833 |
|---|---|
| Chromosome Location | chr12:48844674-48844675 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11168572 | 0.85[ASN][1000 genomes] |
| rs11168584 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11168601 | 0.83[AFR][1000 genomes] |
| rs11611327 | 0.82[EUR][1000 genomes] |
| rs11612896 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11829869 | 0.81[AFR][1000 genomes] |
| rs11830262 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11832311 | 0.81[AFR][1000 genomes] |
| rs11833650 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11834979 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11836257 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11837374 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12318285 | 0.93[EUR][1000 genomes] |
| rs12424940 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17123105 | 0.83[AFR][1000 genomes] |
| rs17123106 | 0.83[AFR][1000 genomes] |
| rs17123108 | 0.83[AFR][1000 genomes] |
| rs2068293 | 0.83[AFR][1000 genomes] |
| rs34400124 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4146339 | 0.84[ASN][1000 genomes] |
| rs4146340 | 0.84[ASN][1000 genomes] |
| rs4265629 | 0.83[AFR][1000 genomes] |
| rs4500527 | 0.81[AFR][1000 genomes] |
| rs56053566 | 0.91[EUR][1000 genomes] |
| rs56413025 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56796388 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72644858 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72644859 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72644862 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72644863 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72644864 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72644865 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv832402 | chr12:48686761-48851020 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv977157 | chr12:48839854-48852791 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48844600-48845000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
