Variant report

Variant	rs61947266
Chromosome Location	chr13:38020470-38020471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1107244	0.90[ASN][1000 genomes]
rs12584046	0.90[ASN][1000 genomes]
rs12584670	0.90[ASN][1000 genomes]
rs1322804	0.89[ASN][1000 genomes]
rs1570387	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1590305	0.88[ASN][1000 genomes]
rs17055629	0.96[ASN][1000 genomes]
rs17055871	0.90[ASN][1000 genomes]
rs1923716	0.92[ASN][1000 genomes]
rs2224659	0.89[ASN][1000 genomes]
rs2323487	0.90[ASN][1000 genomes]
rs3764077	0.90[ASN][1000 genomes]
rs3764078	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55903929	0.88[ASN][1000 genomes]
rs56098078	0.88[ASN][1000 genomes]
rs57123822	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58722541	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979745	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61946575	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61946576	0.90[ASN][1000 genomes]
rs61946592	0.90[ASN][1000 genomes]
rs61946593	0.90[ASN][1000 genomes]
rs61947241	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61947269	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563550	0.90[ASN][1000 genomes]
rs6563551	0.90[ASN][1000 genomes]
rs73180681	0.90[ASN][1000 genomes]
rs7324216	0.90[ASN][1000 genomes]
rs7334752	0.95[ASN][1000 genomes]
rs7337526	0.90[ASN][1000 genomes]
rs7338422	0.90[ASN][1000 genomes]
rs7984882	0.88[ASN][1000 genomes]
rs7986069	0.86[ASN][1000 genomes]
rs7994129	0.95[ASN][1000 genomes]
rs7995332	0.88[ASN][1000 genomes]
rs8002916	0.81[ASN][1000 genomes]
rs875082	0.90[ASN][1000 genomes]
rs9547873	0.84[ASN][1000 genomes]
rs9547877	0.96[ASN][1000 genomes]
rs9576269	0.96[ASN][1000 genomes]
rs9594204	0.88[ASN][1000 genomes]
rs9594212	0.88[ASN][1000 genomes]
rs9594214	0.90[ASN][1000 genomes]
rs9603185	0.96[ASN][1000 genomes]
rs9603186	0.95[ASN][1000 genomes]
rs9603191	0.92[ASN][1000 genomes]
rs9603194	0.95[ASN][1000 genomes]
rs9603195	0.89[ASN][1000 genomes]
rs9603210	0.95[ASN][1000 genomes]
rs9603213	0.90[ASN][1000 genomes]
rs9603214	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38017800-38020600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38020200-38021400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:38020200-38021400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:38020200-38021400	Enhancers	Osteobl	bone
5	chr13:38020200-38021600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:38020200-38021600	Enhancers	NHEK	skin
7	chr13:38020200-38021600	Enhancers	NHLF	lung
8	chr13:38020200-38022400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:38020200-38022600	Enhancers	HSMM	muscle
10	chr13:38020200-38022600	Enhancers	NHDF-Ad	bronchial
11	chr13:38020200-38022800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:38020200-38022800	Enhancers	HSMMtube	muscle
13	chr13:38020400-38020600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr13:38020400-38021400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:38020400-38021400	Enhancers	Fetal Heart	heart
16	chr13:38020400-38021400	Enhancers	HMEC	breast
17	chr13:38020400-38021400	Enhancers	NH-A	brain
18	chr13:38020400-38021800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:38020400-38022800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:38020400-38024200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links