Variant report

Variant	rs61947282
Chromosome Location	chr13:30488985-30488986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3847988	0.88[EUR][1000 genomes]
rs492404	0.88[EUR][1000 genomes]
rs503010	0.88[EUR][1000 genomes]
rs61947284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61947285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660017	0.88[EUR][1000 genomes]
rs7323424	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs927734	0.88[EUR][1000 genomes]
rs9508593	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30476800-30497600	Weak transcription	Right Atrium	heart
2	chr13:30477000-30492400	Weak transcription	Pancreas	Pancrea
3	chr13:30481400-30494000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:30483600-30489200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:30484800-30491200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:30484800-30491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:30484800-30492400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:30485000-30494200	Weak transcription	A549	lung
9	chr13:30486400-30492400	Weak transcription	Esophagus	oesophagus
10	chr13:30486400-30492400	Weak transcription	Placenta	Placenta
11	chr13:30486400-30492400	Weak transcription	Gastric	stomach
12	chr13:30487600-30489200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr13:30488800-30489600	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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