Variant report

Variant	rs61951796
Chromosome Location	chr13:48073214-48073215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2598107	chr13:48072196-48073748	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2347281	chr13:48072714-48073407	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3510230	chr13:48072752-48073313	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3510219	chr13:48072807-48073293	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3510263	chr13:48072810-48073275	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3510241	chr13:48072824-48073232	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3510274	chr13:48072882-48073215	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48071200-48075200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:48071600-48073400	Enhancers	Hela-S3	cervix
3	chr13:48071800-48073600	Enhancers	Primary hematopoietic stem cells	blood
4	chr13:48071800-48073600	Weak transcription	Brain Hippocampus Middle	brain
5	chr13:48072000-48073800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:48072200-48076400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:48072400-48073400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:48072600-48074400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:48072600-48076200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:48072600-48076200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:48072800-48073400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr13:48072800-48073600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:48072800-48082600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:48073000-48073400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:48073200-48073400	Enhancers	NH-A	brain
16	chr13:48073200-48073600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:48073200-48073600	Enhancers	HMEC	breast
18	chr13:48073200-48074800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links