Variant report

Variant	rs61958157
Chromosome Location	chr13:76360554-76360555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12428250	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428617	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12428746	0.87[AFR][1000 genomes]
rs12429534	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12430034	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1542115	0.87[AFR][1000 genomes]
rs17065053	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17065074	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1924094	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241913	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4885357	0.87[AFR][1000 genomes]
rs56030259	0.84[EUR][1000 genomes]
rs58447742	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61958154	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61958155	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61958156	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61959560	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61959561	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61959635	0.87[AFR][1000 genomes]
rs9544053	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76338000-76362800	Weak transcription	Fetal Stomach	stomach
2	chr13:76338800-76371000	Weak transcription	Fetal Thymus	thymus
3	chr13:76340000-76363600	Weak transcription	Thymus	Thymus
4	chr13:76343400-76370800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr13:76346800-76361600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr13:76347400-76361400	Weak transcription	HMEC	breast
7	chr13:76347800-76361400	Weak transcription	Gastric	stomach
8	chr13:76350000-76371000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr13:76350600-76361200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:76353400-76362800	Weak transcription	Lung	lung
11	chr13:76353400-76370600	Weak transcription	Primary T cells from cord blood	blood
12	chr13:76355200-76362400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr13:76355600-76370800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr13:76357000-76361400	Weak transcription	NH-A	brain
15	chr13:76357000-76362400	Weak transcription	Esophagus	oesophagus
16	chr13:76357000-76362800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:76357000-76363000	Weak transcription	Fetal Kidney	kidney
18	chr13:76357000-76368400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:76357200-76363000	Weak transcription	Brain Anterior Caudate	brain
20	chr13:76357800-76362800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:76357800-76363000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:76358200-76361400	Weak transcription	HepG2	liver
23	chr13:76358200-76370800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr13:76358200-76371400	Weak transcription	NHEK	skin
25	chr13:76358400-76361200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr13:76358400-76361200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:76358400-76361400	Weak transcription	Ovary	ovary
28	chr13:76358400-76362600	Weak transcription	Small Intestine	intestine
29	chr13:76358400-76362800	Weak transcription	Pancreas	Pancrea
30	chr13:76358400-76363000	Weak transcription	Psoas Muscle	Psoas
31	chr13:76358600-76361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:76358600-76362600	Weak transcription	Colonic Mucosa	Colon
33	chr13:76358600-76362800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr13:76358800-76360800	Weak transcription	HSMMtube	muscle
35	chr13:76358800-76361400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:76358800-76361400	Weak transcription	Stomach Mucosa	stomach
37	chr13:76359000-76361000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr13:76359600-76361400	Weak transcription	Fetal Intestine Small	intestine
39	chr13:76359600-76361400	Genic enhancers	Hela-S3	cervix
40	chr13:76360000-76360800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr13:76360000-76361200	Weak transcription	A549	lung
42	chr13:76360000-76361600	Genic enhancers	HSMM	muscle
43	chr13:76360000-76362200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr13:76360200-76360600	Enhancers	Placenta	Placenta
45	chr13:76360200-76360600	Genic enhancers	NHDF-Ad	bronchial
46	chr13:76360200-76360800	Enhancers	Right Ventricle	heart
47	chr13:76360200-76361600	Enhancers	Left Ventricle	heart
48	chr13:76360200-76364000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr13:76360200-76367000	Genic enhancers	Osteobl	bone
50	chr13:76360400-76360600	Enhancers	Fetal Intestine Large	intestine

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