Variant report
| Variant | rs61959377 |
|---|---|
| Chromosome Location | chr13:88812000-88812001 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55684747 | 0.81[EUR][1000 genomes] |
| rs55822243 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs57902912 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61959376 | 0.96[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs61959382 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61959421 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61959422 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61959423 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61959429 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61959449 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61959456 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61959457 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61959459 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72632526 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72632527 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72632528 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72632530 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72632533 | 0.81[EUR][1000 genomes] |
| rs7331809 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7334500 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs74104215 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs890558 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900790 | chr13:88585928-88891870 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv900792 | chr13:88623302-88871759 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv900793 | chr13:88711960-88871759 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1037729 | chr13:88728499-89127873 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv541864 | chr13:88728499-89127873 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | esv1806101 | chr13:88771495-88910106 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | esv1812668 | chr13:88771495-88910106 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:88810800-88814000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
