Variant report

Variant	rs61965891
Chromosome Location	chr13:95820467-95820468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95815115..95817034-chr13:95818445..95820987,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7985457	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:95756400-95828200	Weak transcription	HSMM	muscle
4	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
5	chr13:95782000-95828000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:95787800-95827200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr13:95791000-95821400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
9	chr13:95806800-95826800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:95807000-95826800	Weak transcription	NH-A	brain
11	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
12	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
13	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
15	chr13:95807400-95827000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr13:95807400-95828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr13:95807400-95837800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr13:95807600-95824600	Weak transcription	HUVEC	blood vessel
19	chr13:95807600-95829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:95807800-95825400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:95808200-95826600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr13:95808200-95841800	Weak transcription	Osteobl	bone
23	chr13:95808400-95826200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr13:95808400-95833400	Weak transcription	Fetal Kidney	kidney
25	chr13:95808400-95854600	Weak transcription	NHEK	skin
26	chr13:95808600-95827200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:95808600-95827200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:95809000-95829200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr13:95810400-95822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr13:95810400-95829000	Weak transcription	Adipose Nuclei	Adipose
31	chr13:95810400-95836200	Weak transcription	Fetal Thymus	thymus
32	chr13:95810400-95836400	Weak transcription	Thymus	Thymus
33	chr13:95810800-95826200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr13:95812400-95831400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr13:95812800-95826800	Weak transcription	Gastric	stomach
36	chr13:95812800-95833400	Weak transcription	Pancreas	Pancrea
37	chr13:95813200-95824000	Weak transcription	Fetal Lung	lung
38	chr13:95813200-95825400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
40	chr13:95813600-95821200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr13:95814200-95828000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr13:95814600-95832400	Weak transcription	HepG2	liver
43	chr13:95814800-95822000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:95814800-95823800	Weak transcription	Brain Hippocampus Middle	brain
45	chr13:95814800-95831200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr13:95814800-95833400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:95815000-95844200	Weak transcription	Fetal Muscle Leg	muscle
48	chr13:95815200-95847800	Weak transcription	Hela-S3	cervix
49	chr13:95815600-95822400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:95816400-95828000	Weak transcription	Placenta	Placenta

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