Variant report

Variant	rs61973205
Chromosome Location	chr14:21928485-21928486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21927154..21929240-chr14:21977185..21979577,2	MCF-7	breast:
2	chr14:21927790..21931604-chr14:21933413..21935482,4	K562	blood:
3	chr14:21922608..21930261-chr14:21941288..21947915,21	MCF-7	breast:
4	chr14:21927480..21929708-chr14:21977698..21979335,2	K562	blood:

Variant related genes	Relation type
ENSG00000165819	Chromatin interaction
ENSG00000129472	Chromatin interaction
ENSG00000092203	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10145520	0.84[AFR][1000 genomes]
rs1045811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845628	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848193	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12880071	0.82[AMR][1000 genomes]
rs12884313	0.82[AMR][1000 genomes]
rs17106448	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33919729	0.82[AMR][1000 genomes]
rs34765612	0.82[AMR][1000 genomes]
rs35446048	0.81[AMR][1000 genomes]
rs35856604	0.84[AMR][1000 genomes]
rs3762161	0.85[AMR][1000 genomes]
rs3790070	1.00[ASN][1000 genomes]
rs4981372	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982449	0.82[AMR][1000 genomes]
rs55886165	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56144428	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56267245	0.83[AFR][1000 genomes]
rs56310285	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57098252	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59617955	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59852035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61973214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67492181	0.82[AMR][1000 genomes]
rs73581403	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73581408	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73581411	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73581416	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73581419	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21924800-21928800	Weak transcription	Gastric	stomach
2	chr14:21924800-21929200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:21924800-21929200	Weak transcription	Esophagus	oesophagus
4	chr14:21924800-21929200	Weak transcription	Lung	lung
5	chr14:21924800-21929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:21924800-21944600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:21925000-21928800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:21925000-21928800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:21925000-21928800	Weak transcription	Aorta	Aorta
10	chr14:21925000-21928800	Weak transcription	NHDF-Ad	bronchial
11	chr14:21925000-21929000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:21925000-21929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:21925000-21929000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:21925000-21929000	Weak transcription	Right Ventricle	heart
15	chr14:21925000-21929000	Weak transcription	Osteobl	bone
16	chr14:21925000-21929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:21925000-21929200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:21925000-21929200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:21925000-21929200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:21925000-21929200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:21925000-21929200	Weak transcription	Fetal Brain Female	brain
22	chr14:21925000-21929200	Weak transcription	Fetal Lung	lung
23	chr14:21925000-21929200	Weak transcription	Ovary	ovary
24	chr14:21925000-21929200	Weak transcription	Pancreas	Pancrea
25	chr14:21925000-21929200	Weak transcription	GM12878-XiMat	blood
26	chr14:21925000-21929200	Weak transcription	NHLF	lung
27	chr14:21925000-21929400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:21925000-21929400	Weak transcription	Brain Germinal Matrix	brain
29	chr14:21925000-21929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:21925000-21935600	Weak transcription	Fetal Brain Male	brain
31	chr14:21925000-21935800	Weak transcription	Fetal Heart	heart
32	chr14:21925000-21940400	Weak transcription	K562	blood
33	chr14:21925000-21943800	Weak transcription	HMEC	breast
34	chr14:21925000-21944000	Weak transcription	Stomach Mucosa	stomach
35	chr14:21925000-21944400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:21925000-21944600	Weak transcription	Small Intestine	intestine
37	chr14:21925200-21928800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:21925200-21928800	Weak transcription	Colonic Mucosa	Colon
39	chr14:21925200-21928800	Weak transcription	Fetal Intestine Small	intestine
40	chr14:21925200-21929000	Weak transcription	Primary T cells from cord blood	blood
41	chr14:21925200-21929000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:21925200-21929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:21925200-21929000	Weak transcription	Psoas Muscle	Psoas
44	chr14:21925200-21929200	Weak transcription	Brain Anterior Caudate	brain
45	chr14:21925200-21929200	Weak transcription	Fetal Kidney	kidney
46	chr14:21925200-21929200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr14:21925200-21929200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr14:21925200-21929200	Weak transcription	A549	lung
49	chr14:21925200-21929400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:21925200-21929800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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