Variant report

Variant	rs61973347
Chromosome Location	chr13:48845748-48845749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48842870..48845790-chr13:48847077..48849095,2	MCF-7	breast:
2	chr13:48605353..48607010-chr13:48845473..48847893,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17071686	1.00[AMR][1000 genomes]
rs4151431	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48828600-48845800	Weak transcription	Stomach Mucosa	stomach
2	chr13:48833800-48851600	Weak transcription	Fetal Heart	heart
3	chr13:48835800-48849400	Weak transcription	NHLF	lung
4	chr13:48837800-48848000	Weak transcription	A549	lung
5	chr13:48837800-48848600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:48837800-48848600	Weak transcription	Fetal Brain Female	brain
7	chr13:48837800-48853000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:48837800-48856400	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:48838000-48847000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:48838000-48847800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:48838000-48847800	Weak transcription	Psoas Muscle	Psoas
12	chr13:48838000-48849600	Weak transcription	Right Ventricle	heart
13	chr13:48838000-48850000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:48838000-48850000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:48838000-48852800	Weak transcription	HUVEC	blood vessel
16	chr13:48838200-48849600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:48838400-48846600	Weak transcription	NHDF-Ad	bronchial
18	chr13:48838400-48847000	Weak transcription	Brain Substantia Nigra	brain
19	chr13:48839200-48846200	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:48839800-48848600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr13:48839800-48850200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:48840000-48851600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:48840200-48846600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr13:48841800-48846200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr13:48841800-48852000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:48841800-48853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr13:48843800-48846000	Weak transcription	Colonic Mucosa	Colon
28	chr13:48843800-48846000	Weak transcription	Gastric	stomach
29	chr13:48843800-48846000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr13:48843800-48847000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:48843800-48849800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr13:48843800-48850400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:48844000-48845800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:48844000-48845800	Weak transcription	Liver	Liver
35	chr13:48844000-48846400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr13:48844000-48847600	Weak transcription	Fetal Kidney	kidney
37	chr13:48844000-48849800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:48844000-48850600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:48844200-48845800	Weak transcription	Small Intestine	intestine
40	chr13:48844200-48846000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr13:48844200-48846200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr13:48844200-48847800	Weak transcription	Brain Angular Gyrus	brain
43	chr13:48844200-48848400	Weak transcription	Fetal Lung	lung
44	chr13:48844200-48850000	Weak transcription	HSMM	muscle
45	chr13:48844200-48850600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr13:48844200-48853000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr13:48844400-48846000	Weak transcription	Primary T cells from cord blood	blood
48	chr13:48844400-48846000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr13:48844400-48846000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr13:48844400-48846000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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