Variant report

Variant	rs61976802
Chromosome Location	chr14:31465614-31465615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31462254..31468952-chr14:31492285..31496312,7	MCF-7	breast:
2	chr14:31465612..31467146-chr14:31491620..31494583,2	K562	blood:
3	chr14:31464216..31466853-chr14:31676054..31677985,2	MCF-7	breast:
4	chr14:31458519..31461343-chr14:31465487..31467458,2	K562	blood:
5	chr14:31463269..31470932-chr14:31491620..31497354,8	K562	blood:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction
ENSG00000196792	Chromatin interaction
ENSG00000100478	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11156656	0.90[ASN][1000 genomes]
rs2295131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61976804	0.86[ASN][1000 genomes]
rs61976805	0.81[ASN][1000 genomes]
rs61976816	0.86[ASN][1000 genomes]
rs61976819	0.86[ASN][1000 genomes]
rs7146837	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31442400-31494400	Weak transcription	Gastric	stomach
2	chr14:31443400-31493800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:31444000-31472800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:31455200-31466400	Weak transcription	Primary T cells from cord blood	blood
5	chr14:31457200-31467600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:31457400-31467200	Weak transcription	Dnd41	blood
7	chr14:31457600-31467200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:31458600-31467200	Weak transcription	Lung	lung
9	chr14:31458600-31494000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:31460800-31467200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:31461000-31467600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:31461200-31466600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:31461200-31467400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:31461200-31492400	Weak transcription	Fetal Kidney	kidney
15	chr14:31461200-31494400	Weak transcription	Small Intestine	intestine
16	chr14:31461400-31467000	Weak transcription	Primary B cells from cord blood	blood
17	chr14:31461400-31467000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:31461400-31487400	Weak transcription	Right Ventricle	heart
19	chr14:31462000-31466600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:31462400-31467000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:31462400-31467200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:31463200-31465800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:31463200-31465800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr14:31463400-31465800	Enhancers	Colon Smooth Muscle	Colon
25	chr14:31463400-31465800	Enhancers	HSMM	muscle
26	chr14:31463400-31466600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:31463600-31467200	Weak transcription	Fetal Intestine Small	intestine
28	chr14:31463800-31465800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:31463800-31465800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:31463800-31465800	Enhancers	Adipose Nuclei	Adipose
31	chr14:31463800-31465800	Enhancers	Brain Substantia Nigra	brain
32	chr14:31463800-31465800	Enhancers	HSMMtube	muscle
33	chr14:31463800-31466200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr14:31463800-31466400	Enhancers	NHDF-Ad	bronchial
35	chr14:31463800-31467800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr14:31464000-31465800	Enhancers	Liver	Liver
37	chr14:31464000-31465800	Enhancers	Brain Hippocampus Middle	brain
38	chr14:31464000-31465800	Enhancers	Rectal Smooth Muscle	rectum
39	chr14:31464000-31466800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr14:31464000-31466800	Enhancers	Brain Anterior Caudate	brain
41	chr14:31464200-31466200	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr14:31464200-31466200	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr14:31464200-31467800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:31464200-31493600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:31464400-31466000	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr14:31464400-31466400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:31464400-31466600	Enhancers	Stomach Smooth Muscle	stomach
48	chr14:31464400-31467000	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr14:31464400-31467600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr14:31464400-31492400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links