Variant report
Variant | rs61977137 |
---|---|
Chromosome Location | chr14:38241396-38241397 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
TTC6 | TF binding region |
rs_ID | r2[population] |
---|---|
rs1957582 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1957583 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs61977125 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs61977138 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67254445 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8015572 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530038 | chr14:37590543-38336191 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
2 | nsv916985 | chr14:38052347-38838551 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
3 | nsv564383 | chr14:38223275-38262762 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
4 | nsv564384 | chr14:38233493-38262762 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
No data |