Variant report

Variant	rs61979489
Chromosome Location	chr14:70703600-70703601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12587023	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12590737	0.89[ASN][1000 genomes]
rs1469255	0.84[ASN][1000 genomes]
rs1469256	0.84[ASN][1000 genomes]
rs1999049	0.90[ASN][1000 genomes]
rs1999050	0.92[ASN][1000 genomes]
rs2022743	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55688571	0.83[ASN][1000 genomes]
rs55819700	0.94[ASN][1000 genomes]
rs56197954	0.94[ASN][1000 genomes]
rs58204263	0.92[ASN][1000 genomes]
rs61979484	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61979490	0.93[ASN][1000 genomes]
rs6573941	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573943	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66477892	0.83[ASN][1000 genomes]
rs66496471	0.89[ASN][1000 genomes]
rs6650512	0.89[ASN][1000 genomes]
rs66629175	0.89[ASN][1000 genomes]
rs66790139	0.89[ASN][1000 genomes]
rs67216814	0.92[ASN][1000 genomes]
rs67225044	0.89[ASN][1000 genomes]
rs67368416	0.92[ASN][1000 genomes]
rs67986564	0.86[ASN][1000 genomes]
rs68002282	0.86[ASN][1000 genomes]
rs68025966	0.90[ASN][1000 genomes]
rs68061000	0.89[ASN][1000 genomes]
rs68076268	0.89[ASN][1000 genomes]
rs7142682	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7145582	0.92[ASN][1000 genomes]
rs7147026	0.92[ASN][1000 genomes]
rs7148933	0.94[ASN][1000 genomes]
rs7148993	0.92[ASN][1000 genomes]
rs72476793	0.86[ASN][1000 genomes]
rs72625690	0.92[ASN][1000 genomes]
rs72625691	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72731870	0.83[ASN][1000 genomes]
rs8003965	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8004391	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8011983	0.92[ASN][1000 genomes]
rs8019979	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8020127	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70701800-70721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70703400-70704800	Enhancers	K562	blood

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