Variant report

Variant	rs61979849
Chromosome Location	chr14:97208301-97208302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17214549	1.00[AFR][1000 genomes]
rs61980995	1.00[AFR][1000 genomes]
rs61981033	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv85164	chr14:97207464-97209699	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97206200-97208800	Enhancers	Fetal Brain Male	brain
2	chr14:97206800-97208400	Bivalent/Poised TSS	HSMM	muscle
3	chr14:97207400-97208400	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr14:97207400-97208400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:97207400-97208400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:97207400-97208400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:97207400-97208400	Active TSS	Brain Anterior Caudate	brain
8	chr14:97207400-97208600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr14:97207400-97208600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr14:97207400-97208800	Active TSS	H9 Cell Line	embryonic stem cell
11	chr14:97207600-97208400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:97207600-97208400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:97207600-97208400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:97207600-97208400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
15	chr14:97207600-97208400	Enhancers	Pancreas	Pancrea
16	chr14:97207600-97208400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
17	chr14:97207600-97208600	Active TSS	H1 Cell Line	embryonic stem cell
18	chr14:97207600-97208600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:97207800-97208400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr14:97207800-97208400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr14:97207800-97208400	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
22	chr14:97207800-97208400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:97207800-97208400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:97207800-97208400	Active TSS	Brain Germinal Matrix	brain
25	chr14:97207800-97208400	Active TSS	Fetal Brain Female	brain
26	chr14:97207800-97208400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr14:97207800-97208400	Bivalent/Poised TSS	Thymus	Thymus
28	chr14:97207800-97208400	Bivalent/Poised TSS	HepG2	liver
29	chr14:97207800-97208600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr14:97207800-97208600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
31	chr14:97208000-97208400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:97208000-97208400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:97208000-97208400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:97208000-97208400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
35	chr14:97208000-97208400	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
36	chr14:97208000-97208400	Bivalent Enhancer	Primary B cells from cord blood	blood
37	chr14:97208000-97208400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr14:97208000-97208400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
39	chr14:97208000-97208400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:97208000-97208400	Bivalent Enhancer	Adipose Nuclei	Adipose
41	chr14:97208000-97208400	Enhancers	Liver	Liver
42	chr14:97208000-97208400	Bivalent Enhancer	Colonic Mucosa	Colon
43	chr14:97208000-97208400	Bivalent Enhancer	Left Ventricle	heart
44	chr14:97208000-97208400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
45	chr14:97208000-97208400	Bivalent Enhancer	Dnd41	blood
46	chr14:97208000-97208400	Bivalent Enhancer	HMEC	breast
47	chr14:97208000-97208600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
48	chr14:97208200-97208400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr14:97208200-97208400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:97208200-97208400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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