Variant report

Variant	rs61981584
Chromosome Location	chr14:69388314-69388315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:69388293-69388530	HepG2	liver:	n/a	n/a
2	CTCF	chr14:69388300-69388450	HAc	cerebellar:	n/a	n/a
3	NR2F2	chr14:69388277-69388922	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69385888..69393669-chr14:69442988..69447287,14	MCF-7	breast:
2	chr14:69385676..69391979-chr14:69443116..69446617,6	MCF-7	breast:

Variant related genes	Relation type
ACTN1	TF binding region
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

rs_ID	r²[population]
rs57325880	0.87[ASN][1000 genomes]
rs60020535	0.89[ASN][1000 genomes]
rs8003257	0.87[ASN][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
2	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:69345800-69394800	Weak transcription	Small Intestine	intestine
4	chr14:69348200-69389200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:69354000-69393200	Strong transcription	NHEK	skin
6	chr14:69354600-69393000	Strong transcription	Dnd41	blood
7	chr14:69360600-69388800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:69362600-69389200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:69362600-69393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:69369000-69391200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69372400-69404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:69376000-69388600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:69376000-69389400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:69376000-69395400	Weak transcription	Brain Angular Gyrus	brain
15	chr14:69376600-69392400	Weak transcription	Brain Germinal Matrix	brain
16	chr14:69378200-69389200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:69378800-69388400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:69378800-69394000	Weak transcription	Stomach Mucosa	stomach
19	chr14:69378800-69402400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:69379000-69388400	Strong transcription	NH-A	brain
21	chr14:69380200-69389200	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:69380200-69389400	Strong transcription	Liver	Liver
23	chr14:69380200-69392600	Strong transcription	HUVEC	blood vessel
24	chr14:69380600-69388400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:69380600-69388400	Strong transcription	HMEC	breast
26	chr14:69380600-69389800	Strong transcription	Lung	lung
27	chr14:69380800-69388400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:69380800-69388800	Weak transcription	Right Atrium	heart
29	chr14:69380800-69389800	Strong transcription	Osteobl	bone
30	chr14:69381000-69388600	Strong transcription	HSMMtube	muscle
31	chr14:69381400-69388400	Strong transcription	A549	lung
32	chr14:69381600-69388800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:69382000-69388400	Strong transcription	NHLF	lung
34	chr14:69382000-69388800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr14:69382000-69391000	Strong transcription	NHDF-Ad	bronchial
36	chr14:69382000-69394200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:69383400-69388600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:69383400-69388800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:69383400-69389200	Weak transcription	Brain Hippocampus Middle	brain
40	chr14:69383600-69391000	Weak transcription	Thymus	Thymus
41	chr14:69384200-69388400	Strong transcription	Fetal Intestine Small	intestine
42	chr14:69384200-69388600	Strong transcription	Fetal Intestine Large	intestine
43	chr14:69384400-69388400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr14:69384400-69388400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:69384400-69388400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:69384400-69388400	Strong transcription	HepG2	liver
47	chr14:69384400-69388800	Genic enhancers	Stomach Smooth Muscle	stomach
48	chr14:69384800-69389400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr14:69385200-69393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:69385400-69391400	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links