Variant report

Variant	rs61982066
Chromosome Location	chr14:70197912-70197913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70197804..70198304-chr14:70784410..70784956,2	MCF-7	breast:
2	chr14:70197756..70198528-chr14:70270268..70270789,2	MCF-7	breast:
3	chr14:70195404..70198253-chr14:70727101..70728631,2	MCF-7	breast:
4	chr14:70197738..70198601-chr14:70540269..70540977,2	MCF-7	breast:
5	chr14:70196506..70199794-chr14:70233673..70236753,3	MCF-7	breast:
6	chr14:70197681..70198585-chr14:70494474..70495292,3	MCF-7	breast:
7	chr14:70197684..70198646-chr14:70285086..70285735,2	MCF-7	breast:
8	chr14:70196914..70198429-chr14:70246802..70249135,2	MCF-7	breast:
9	chr14:70197690..70198396-chr14:70540247..70541152,2	MCF-7	breast:
10	chr14:70195248..70198988-chr14:70201420..70203953,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11622083	0.92[ASN][1000 genomes]
rs11622092	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11624654	0.88[ASN][1000 genomes]
rs11624754	0.88[ASN][1000 genomes]
rs12589061	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332163	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2332165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902742	0.81[EUR][1000 genomes]
rs55654254	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56325932	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57016627	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57346352	0.92[ASN][1000 genomes]
rs61982064	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982065	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70194000-70199200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70194200-70200400	Weak transcription	Esophagus	oesophagus
3	chr14:70197800-70198000	Flanking Active TSS	Hela-S3	cervix
4	chr14:70197800-70198200	Flanking Active TSS	Liver	Liver
5	chr14:70197800-70198200	Active TSS	Duodenum Mucosa	Duodenum
6	chr14:70197800-70198200	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr14:70197800-70198200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr14:70197800-70198200	Flanking Active TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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