Variant report

Variant	rs61985721
Chromosome Location	chr14:64260740-64260741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11158509	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158510	0.82[ASN][1000 genomes]
rs11847056	0.84[ASN][1000 genomes]
rs11848677	0.82[ASN][1000 genomes]
rs11849690	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11850357	0.84[ASN][1000 genomes]
rs12147063	0.82[ASN][1000 genomes]
rs12586475	0.84[ASN][1000 genomes]
rs12589129	0.84[ASN][1000 genomes]
rs12589296	0.84[ASN][1000 genomes]
rs12878017	0.84[ASN][1000 genomes]
rs12880638	0.82[ASN][1000 genomes]
rs12886839	0.84[ASN][1000 genomes]
rs12890491	0.81[ASN][1000 genomes]
rs2007726	0.83[ASN][1000 genomes]
rs2149676	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149677	0.84[ASN][1000 genomes]
rs2356995	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356996	0.84[ASN][1000 genomes]
rs4243627	0.84[ASN][1000 genomes]
rs4480718	0.81[ASN][1000 genomes]
rs4591051	0.83[ASN][1000 genomes]
rs4899118	0.81[ASN][1000 genomes]
rs4899119	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59529583	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61985722	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61985723	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7143343	0.84[ASN][1000 genomes]
rs7143535	0.84[ASN][1000 genomes]
rs7148088	0.84[ASN][1000 genomes]
rs7148584	0.83[ASN][1000 genomes]
rs7154239	0.80[ASN][1000 genomes]
rs7154341	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155129	0.84[ASN][1000 genomes]
rs7493843	0.84[ASN][1000 genomes]
rs8005553	0.83[ASN][1000 genomes]
rs8005831	0.80[ASN][1000 genomes]
rs8008552	0.84[ASN][1000 genomes]
rs8014975	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8015311	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv564902	chr14:64230089-64280206	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv564903	chr14:64248549-64266899	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64254600-64275200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:64255400-64265600	Weak transcription	Placenta	Placenta
3	chr14:64255400-64270000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:64256200-64272200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:64260600-64266200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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