Variant report

Variant	rs61986102
Chromosome Location	chr14:82233596-82233597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10140242	0.85[EUR][1000 genomes]
rs10146923	0.81[ASN][1000 genomes]
rs1074169	0.88[ASN][1000 genomes]
rs17115752	0.81[ASN][1000 genomes]
rs17115759	0.81[ASN][1000 genomes]
rs17115890	0.88[ASN][1000 genomes]
rs17115911	0.88[ASN][1000 genomes]
rs17115913	0.88[ASN][1000 genomes]
rs1958214	0.81[ASN][1000 genomes]
rs1958215	0.81[ASN][1000 genomes]
rs1958224	0.88[ASN][1000 genomes]
rs1958227	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1958229	0.85[EUR][1000 genomes]
rs2025963	0.88[ASN][1000 genomes]
rs2025965	0.85[ASN][1000 genomes]
rs2031857	0.81[ASN][1000 genomes]
rs2031858	0.81[ASN][1000 genomes]
rs2149288	1.00[ASN][1000 genomes]
rs3072019	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4904024	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4904025	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56210813	0.81[ASN][1000 genomes]
rs61986084	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61986086	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61986103	1.00[ASN][1000 genomes]
rs61986146	1.00[ASN][1000 genomes]
rs61986149	1.00[ASN][1000 genomes]
rs61986152	0.91[ASN][1000 genomes]
rs61987156	0.81[ASN][1000 genomes]
rs61988876	0.81[ASN][1000 genomes]
rs61988877	0.81[ASN][1000 genomes]
rs61988878	0.81[ASN][1000 genomes]
rs61988881	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61988885	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7157607	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72693375	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013448	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016451	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8018929	0.88[ASN][1000 genomes]
rs8019066	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1037114	chr14:82123315-82241676	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv456347	chr14:82174341-82661389	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv565300	chr14:82174341-82661389	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042626	chr14:82188141-82663597	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1052385	chr14:82190891-82666070	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv542146	chr14:82190891-82666070	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv525823	chr14:82219550-82267945	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3399759	chr14:82233469-82554259	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82231800-82234200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:82231800-82234400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:82231800-82235000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:82232000-82234200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:82232200-82233800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:82232200-82234200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:82232200-82234200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr14:82232800-82234200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:82233000-82233600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:82233000-82234000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:82233000-82235000	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links