Variant report

Variant	rs61986626
Chromosome Location	chr14:81980062-81980063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81684235..81687113-chr14:81978214..81980524,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12185025	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12434541	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12435998	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436488	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17560087	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56357710	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57665733	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61986625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61986627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61988565	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72691458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81941800-81985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:81960200-81983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:81960400-81985800	Weak transcription	Stomach Mucosa	stomach
4	chr14:81964200-81985200	Weak transcription	K562	blood
5	chr14:81964400-81983000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:81967600-81999600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:81970400-81983200	Weak transcription	Hela-S3	cervix
8	chr14:81970800-81983200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:81971200-81983600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:81972600-81980200	Weak transcription	Colonic Mucosa	Colon
11	chr14:81972600-81983600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:81972600-81987000	Weak transcription	NH-A	brain
13	chr14:81972600-81989800	Weak transcription	HMEC	breast
14	chr14:81972800-81982600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:81972800-81983200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:81973200-81983000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:81973400-81980800	Weak transcription	Pancreas	Pancrea
18	chr14:81973400-81982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:81973800-81982400	Weak transcription	Fetal Thymus	thymus
20	chr14:81973800-81983200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:81973800-81988800	Weak transcription	Spleen	Spleen
22	chr14:81973800-81999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:81973800-81999400	Weak transcription	Esophagus	oesophagus
24	chr14:81974200-81983000	Weak transcription	NHEK	skin
25	chr14:81974200-81983200	Weak transcription	Gastric	stomach
26	chr14:81974200-81983400	Weak transcription	HSMM	muscle
27	chr14:81974400-81980800	Weak transcription	Placenta	Placenta
28	chr14:81974600-81980200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:81974800-81980800	Weak transcription	Fetal Brain Female	brain
30	chr14:81974800-81985400	Weak transcription	HUVEC	blood vessel
31	chr14:81974800-81985600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:81974800-81998200	Weak transcription	Fetal Brain Male	brain
33	chr14:81976000-81983200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:81976400-81983000	Weak transcription	NHLF	lung
35	chr14:81976600-81982200	Weak transcription	Psoas Muscle	Psoas
36	chr14:81976600-81982400	Weak transcription	Aorta	Aorta
37	chr14:81976600-81982400	Weak transcription	Left Ventricle	heart
38	chr14:81976600-81982800	Weak transcription	HSMMtube	muscle
39	chr14:81976600-81983200	Weak transcription	Right Atrium	heart
40	chr14:81976600-81984200	Weak transcription	Small Intestine	intestine
41	chr14:81976800-81982800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr14:81976800-81983000	Weak transcription	Fetal Kidney	kidney
43	chr14:81976800-81983000	Weak transcription	Osteobl	bone
44	chr14:81977400-81980600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:81977600-81983400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr14:81977600-81985200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:81977600-81985600	Strong transcription	Primary T cells from cord blood	blood
48	chr14:81977800-81983400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:81978000-81980200	Strong transcription	Dnd41	blood
50	chr14:81978000-81982200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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