Variant report

Variant	rs61988300
Chromosome Location	chr14:35857405-35857406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35853811..35865065-chr14:35868487..35875838,31	K562	blood:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12891176	0.86[ASN][1000 genomes]
rs2057337	0.86[ASN][1000 genomes]
rs28530718	0.86[ASN][1000 genomes]
rs8018657	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
2	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv1047010	chr14:35853661-35887823	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv542037	chr14:35853661-35887823	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
5	nsv977456	chr14:35855022-35858707	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35852800-35857600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:35854800-35859600	Weak transcription	Esophagus	oesophagus
3	chr14:35855000-35859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:35855200-35858200	Weak transcription	Spleen	Spleen
5	chr14:35855200-35859800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:35855200-35859800	Weak transcription	Psoas Muscle	Psoas
7	chr14:35855200-35860000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:35855200-35860000	Weak transcription	Right Atrium	heart
9	chr14:35855200-35863000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:35855200-35865000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:35855200-35865200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:35855200-35866600	Weak transcription	Gastric	stomach
13	chr14:35855200-35866800	Weak transcription	Liver	Liver
14	chr14:35855400-35857600	Enhancers	HepG2	liver
15	chr14:35855400-35860400	Weak transcription	HUVEC	blood vessel
16	chr14:35855400-35866000	Weak transcription	Fetal Intestine Small	intestine
17	chr14:35855400-35866800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:35855400-35866800	Weak transcription	Fetal Thymus	thymus
19	chr14:35855400-35868400	Weak transcription	Brain Angular Gyrus	brain
20	chr14:35855600-35859800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:35855600-35860000	Weak transcription	Lung	lung
22	chr14:35855600-35860200	Weak transcription	NH-A	brain
23	chr14:35855600-35860200	Weak transcription	NHLF	lung
24	chr14:35855600-35860400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:35855600-35863600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:35855600-35866800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:35855600-35868200	Weak transcription	Left Ventricle	heart
28	chr14:35855600-35868600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:35855600-35870000	Weak transcription	Aorta	Aorta
30	chr14:35855800-35870800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:35856000-35859800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:35856000-35859800	Weak transcription	Hela-S3	cervix
33	chr14:35856000-35860000	Weak transcription	A549	lung
34	chr14:35856000-35866600	Weak transcription	Right Ventricle	heart
35	chr14:35856000-35867000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:35856200-35858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:35856200-35859600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:35856200-35860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:35856200-35860400	Weak transcription	Adipose Nuclei	Adipose
40	chr14:35856200-35866600	Weak transcription	Fetal Muscle Leg	muscle
41	chr14:35856200-35869600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:35856200-35869600	Weak transcription	Brain Germinal Matrix	brain
43	chr14:35856400-35859800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:35856400-35860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:35856400-35863000	Weak transcription	Colon Smooth Muscle	Colon
46	chr14:35856400-35866800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr14:35856600-35859600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:35856600-35860200	Weak transcription	NHDF-Ad	bronchial
49	chr14:35856600-35866800	Weak transcription	Fetal Lung	lung
50	chr14:35856800-35858800	Enhancers	Skeletal Muscle Female	skeletal muscle

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