Variant report

Variant	rs61989427
Chromosome Location	chr14:72087038-72087039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10147863	0.92[ASN][1000 genomes]
rs11846689	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17096112	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35169957	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784060	0.92[ASN][1000 genomes]
rs4140798	0.84[ASN][1000 genomes]
rs7149924	0.89[ASN][1000 genomes]
rs9972151	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72053400-72098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:72055200-72087800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:72059000-72098600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:72059400-72088000	Weak transcription	NHLF	lung
5	chr14:72059800-72087600	Weak transcription	Hela-S3	cervix
6	chr14:72063200-72087200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:72065000-72087200	Weak transcription	NHEK	skin
8	chr14:72065800-72089600	Weak transcription	HSMMtube	muscle
9	chr14:72072600-72090600	Weak transcription	Fetal Intestine Large	intestine
10	chr14:72072600-72103600	Weak transcription	Left Ventricle	heart
11	chr14:72072800-72087200	Weak transcription	Aorta	Aorta
12	chr14:72073200-72087200	Weak transcription	Fetal Intestine Small	intestine
13	chr14:72073200-72087400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:72073200-72090600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr14:72073200-72099200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:72073200-72137800	Weak transcription	Esophagus	oesophagus
17	chr14:72073400-72090600	Weak transcription	Pancreas	Pancrea
18	chr14:72073400-72093600	Weak transcription	Gastric	stomach
19	chr14:72073400-72111000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:72074000-72089800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:72074000-72090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr14:72074000-72090600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:72075000-72087600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:72075000-72087800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:72075200-72087200	Weak transcription	Dnd41	blood
26	chr14:72075200-72092600	Weak transcription	Brain Substantia Nigra	brain
27	chr14:72075200-72093800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:72075200-72106800	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:72077800-72088600	Weak transcription	Brain Germinal Matrix	brain
30	chr14:72077800-72089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:72077800-72092800	Weak transcription	Fetal Lung	lung
32	chr14:72077800-72096800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:72078000-72087800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:72078000-72090600	Weak transcription	Adipose Nuclei	Adipose
35	chr14:72078000-72090600	Weak transcription	Brain Anterior Caudate	brain
36	chr14:72078200-72095800	Weak transcription	Fetal Muscle Leg	muscle
37	chr14:72078600-72100000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr14:72080200-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:72080600-72090600	Weak transcription	Ovary	ovary
40	chr14:72081600-72090600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr14:72082600-72125000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:72083000-72087200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:72083000-72111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:72083400-72087200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:72083400-72087600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr14:72083400-72101600	Weak transcription	Fetal Stomach	stomach
47	chr14:72083600-72099000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr14:72083600-72118000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:72083600-72128200	Weak transcription	Spleen	Spleen
50	chr14:72083800-72087400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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