Variant report

Variant	rs61989560
Chromosome Location	chr14:66849925-66849926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66844529..66846704-chr14:66848786..66851261,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55721392	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv1050485	chr14:66308283-67109270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv530775	chr14:66316836-67079049	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv530793	chr14:66317036-67078908	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	esv3385263	chr14:66514718-67511481	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv983837	chr14:66619600-67014519	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv933275	chr14:66649843-67024881	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv1054056	chr14:66848234-66946135	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66840600-66851000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:66842400-66850800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:66845400-66850600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:66846800-66855400	Weak transcription	Esophagus	oesophagus
5	chr14:66847200-66850200	Weak transcription	Fetal Kidney	kidney
6	chr14:66847400-66850600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:66847600-66850000	Weak transcription	Left Ventricle	heart
8	chr14:66848200-66850800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:66849000-66850200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:66849000-66850400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:66849200-66850000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:66849400-66850200	Enhancers	HMEC	breast
13	chr14:66849400-66850200	Enhancers	NHEK	skin
14	chr14:66849400-66850400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr14:66849400-66850400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:66849400-66850400	Enhancers	Adipose Nuclei	Adipose
17	chr14:66849400-66850600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:66849400-66850600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:66849400-66850800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr14:66849400-66850800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr14:66849400-66851000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:66849400-66851600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr14:66849600-66850000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:66849600-66850400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:66849800-66850200	Enhancers	Brain Germinal Matrix	brain
26	chr14:66849800-66850400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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