Variant report

Variant	rs61990287
Chromosome Location	chr14:42069889-42069890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:41749762..41750647-chr14:42069299..42070355,5	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10483526	1.00[ASN][1000 genomes]
rs1103437	0.82[ASN][1000 genomes]
rs1111037	0.82[ASN][1000 genomes]
rs11157241	0.82[ASN][1000 genomes]
rs12437380	0.82[ASN][1000 genomes]
rs17112192	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17781288	1.00[ASN][1000 genomes]
rs1956445	0.91[ASN][1000 genomes]
rs1956450	1.00[ASN][1000 genomes]
rs4356390	1.00[ASN][1000 genomes]
rs55897228	0.91[ASN][1000 genomes]
rs56321769	0.83[AMR][1000 genomes]
rs61990271	0.82[ASN][1000 genomes]
rs61990273	0.82[ASN][1000 genomes]
rs61990274	0.82[ASN][1000 genomes]
rs61990275	0.82[ASN][1000 genomes]
rs61990286	1.00[ASN][1000 genomes]
rs61990288	1.00[ASN][1000 genomes]
rs61990335	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1831164	chr14:41673017-42103168	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1042078	chr14:41993985-42120143	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758353	chr14:42045873-42259511	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759983	chr14:42045873-42259511	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42067000-42074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:42067200-42073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:42067200-42073800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:42067400-42073600	Weak transcription	Placenta	Placenta
5	chr14:42068400-42071400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:42069200-42070200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:42069200-42070600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:42069400-42070200	Enhancers	Fetal Heart	heart
9	chr14:42069600-42070800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:42069600-42070800	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:42069600-42072200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:42069600-42073000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:42069800-42070000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr14:42069800-42070000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr14:42069800-42070000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:42069800-42070000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:42069800-42070800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr14:42069800-42071000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr14:42069800-42071000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:42069800-42071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:42069800-42072000	Enhancers	Fetal Lung	lung
22	chr14:42069800-42072200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:42069800-42073800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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