Variant report

Variant	rs61990741
Chromosome Location	chr14:78356172-78356173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78346765..78348633-chr14:78356131..78358979,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28505135	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28591382	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57643953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990725	0.94[AMR][1000 genomes]
rs61990736	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61990737	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61990742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990743	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990744	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990745	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990751	0.89[AMR][1000 genomes]
rs741572	0.94[AMR][1000 genomes]
rs8009834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022154	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
2	chr14:78327800-78400600	Weak transcription	Colonic Mucosa	Colon
3	chr14:78335800-78358600	Weak transcription	HSMMtube	muscle
4	chr14:78346600-78375600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:78347200-78366000	Weak transcription	Psoas Muscle	Psoas
6	chr14:78348000-78356400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:78349200-78358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:78349200-78397200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:78349200-78407200	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:78349400-78378000	Weak transcription	Fetal Brain Female	brain
11	chr14:78349800-78358400	Weak transcription	Stomach Mucosa	stomach
12	chr14:78350400-78361200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:78350600-78365400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:78350800-78375800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:78350800-78376200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:78351200-78356800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:78352200-78356400	Weak transcription	HMEC	breast
18	chr14:78352600-78398800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:78352800-78356600	Strong transcription	Primary T cells from cord blood	blood
20	chr14:78353000-78356800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:78353200-78356400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:78353400-78356800	Strong transcription	Stomach Smooth Muscle	stomach
23	chr14:78353400-78358200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:78353600-78356200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:78353600-78356200	Strong transcription	Liver	Liver
26	chr14:78353600-78356200	Strong transcription	Left Ventricle	heart
27	chr14:78354000-78375800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:78354000-78375800	Weak transcription	Gastric	stomach
29	chr14:78354200-78356600	Strong transcription	Primary B cells from cord blood	blood
30	chr14:78354400-78356200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:78354400-78374400	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:78354600-78359000	Weak transcription	Right Ventricle	heart
33	chr14:78354600-78360000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:78354600-78365400	Weak transcription	Brain Anterior Caudate	brain
35	chr14:78354600-78366800	Weak transcription	Fetal Stomach	stomach
36	chr14:78354600-78367400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:78354600-78368400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:78354600-78368600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:78354600-78375800	Weak transcription	Brain Substantia Nigra	brain
40	chr14:78354800-78357400	Weak transcription	Pancreas	Pancrea
41	chr14:78354800-78365400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:78354800-78379200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:78354800-78391600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:78355000-78356800	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr14:78355000-78357800	Weak transcription	K562	blood
46	chr14:78355000-78363000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr14:78355000-78365400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr14:78355000-78365400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr14:78355000-78374000	Weak transcription	Ovary	ovary
50	chr14:78355000-78375400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links