Variant report

Variant	rs61991561
Chromosome Location	chr14:80901028-80901029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12589829	0.87[AMR][1000 genomes]
rs12895642	0.90[AMR][1000 genomes]
rs2115801	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6574569	0.84[AMR][1000 genomes]
rs6574570	0.86[AMR][1000 genomes]
rs6574572	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7144237	0.84[AMR][1000 genomes]
rs7145950	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7155573	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8016358	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs985233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985754	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv15289	chr14:80900600-80939903	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80894400-80905600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:80896000-80902000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr14:80900400-80901600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:80900600-80901400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:80900600-80901600	Enhancers	A549	lung
6	chr14:80900600-80902000	Enhancers	HMEC	breast
7	chr14:80900800-80901200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:80900800-80901400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:80900800-80901800	Enhancers	Hela-S3	cervix
10	chr14:80900800-80902000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:80900800-80902000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:80900800-80902000	Enhancers	NHEK	skin
13	chr14:80901000-80901800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr14:80901000-80901800	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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