Variant report

Variant	rs61991610
Chromosome Location	chr14:77466089-77466090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77464722..77466921-chr14:77467153..77468895,2	K562	blood:
2	chr14:77449852..77452425-chr14:77464598..77467462,2	K562	blood:
3	chr14:77463848..77468806-chr14:77472873..77477142,5	MCF-7	breast:
4	chr14:77382222..77384940-chr14:77464479..77467178,2	MCF-7	breast:
5	chr14:77460775..77463371-chr14:77465760..77467521,2	K562	blood:
6	chr14:77465434..77468228-chr14:77469057..77471689,3	MCF-7	breast:
7	chr14:77464297..77467246-chr14:77468821..77471508,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17748723	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61991608	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1037915	chr14:77461610-77561454	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv542142	chr14:77461610-77561454	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv565210	chr14:77461701-77492891	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77451400-77466800	Weak transcription	Right Atrium	heart
2	chr14:77452400-77466800	Weak transcription	HSMMtube	muscle
3	chr14:77460000-77466800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:77460000-77467400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:77461000-77466800	Weak transcription	Esophagus	oesophagus
6	chr14:77461000-77466800	Weak transcription	Fetal Kidney	kidney
7	chr14:77461000-77466800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:77461400-77467800	Enhancers	Fetal Heart	heart
9	chr14:77461600-77466200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr14:77461600-77466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:77461600-77467600	Enhancers	Stomach Mucosa	stomach
12	chr14:77461800-77466800	Weak transcription	Brain Anterior Caudate	brain
13	chr14:77463000-77466600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:77463600-77466800	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:77463600-77470400	Weak transcription	A549	lung
16	chr14:77463800-77466800	Enhancers	Primary B cells from cord blood	blood
17	chr14:77463800-77466800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr14:77463800-77466800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:77463800-77466800	Enhancers	GM12878-XiMat	blood
20	chr14:77464000-77466800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:77464000-77466800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:77464000-77466800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:77464000-77466800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:77464000-77466800	Enhancers	Fetal Muscle Leg	muscle
25	chr14:77464000-77466800	Enhancers	Fetal Thymus	thymus
26	chr14:77464000-77466800	Weak transcription	HSMM	muscle
27	chr14:77464000-77467000	Weak transcription	Gastric	stomach
28	chr14:77464200-77466600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr14:77464200-77466800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr14:77464200-77466800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:77464200-77466800	Enhancers	Primary hematopoietic stem cells	blood
32	chr14:77464200-77466800	Weak transcription	Pancreas	Pancrea
33	chr14:77464200-77466800	Weak transcription	Osteobl	bone
34	chr14:77464200-77467000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:77464200-77470000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:77464200-77470200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr14:77464400-77466400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:77464400-77468000	Enhancers	Fetal Muscle Trunk	muscle
39	chr14:77464600-77466200	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr14:77464600-77466800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:77464600-77466800	Weak transcription	Adipose Nuclei	Adipose
42	chr14:77464600-77466800	Enhancers	Brain Germinal Matrix	brain
43	chr14:77464800-77466800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:77464800-77466800	Weak transcription	NHEK	skin
45	chr14:77464800-77467600	Enhancers	Fetal Intestine Small	intestine
46	chr14:77464800-77468000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:77464800-77470200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:77465000-77466800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:77465000-77466800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:77465000-77466800	Enhancers	Skeletal Muscle Male	skeletal muscle

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