Variant report

Variant	rs61991616
Chromosome Location	chr14:77486622-77486623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77405277..77435131-chr14:77486188..77514894,184	MCF-7	breast:
2	chr14:77419486..77421473-chr14:77485151..77486699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258602	Chromatin interaction
ENSG00000243225	Chromatin interaction
ENSG00000266553	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1504522	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1037915	chr14:77461610-77561454	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv542142	chr14:77461610-77561454	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv565210	chr14:77461701-77492891	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1792437	chr14:77468802-77529928	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
6	nsv902103	chr14:77484210-77540039	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77476600-77488400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:77478400-77488000	Weak transcription	Thymus	Thymus
3	chr14:77478400-77490000	Weak transcription	Primary T cells from cord blood	blood
4	chr14:77480800-77488200	Weak transcription	Fetal Brain Male	brain
5	chr14:77480800-77489000	Weak transcription	Lung	lung
6	chr14:77481000-77488800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:77481000-77489200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:77481200-77488000	Weak transcription	Brain Germinal Matrix	brain
9	chr14:77481200-77488200	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:77481200-77488600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:77481400-77488000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:77481400-77488800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:77481800-77488000	Weak transcription	Fetal Stomach	stomach
14	chr14:77481800-77488200	Weak transcription	Fetal Kidney	kidney
15	chr14:77481800-77488800	Weak transcription	Gastric	stomach
16	chr14:77481800-77489200	Weak transcription	Right Atrium	heart
17	chr14:77482000-77488000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:77482000-77488600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:77482000-77488600	Weak transcription	Pancreas	Pancrea
20	chr14:77482000-77489600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:77482000-77489600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:77482200-77487600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:77482200-77488000	Weak transcription	Fetal Heart	heart
24	chr14:77482200-77488400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:77483000-77488000	Weak transcription	Liver	Liver
26	chr14:77484400-77488200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:77484400-77488800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr14:77484600-77488600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:77484600-77488800	Weak transcription	Fetal Lung	lung
30	chr14:77484800-77488000	Weak transcription	Fetal Thymus	thymus
31	chr14:77484800-77488800	Weak transcription	Adipose Nuclei	Adipose
32	chr14:77485200-77488200	Weak transcription	Fetal Brain Female	brain
33	chr14:77485200-77489200	Weak transcription	Placenta	Placenta
34	chr14:77485200-77489400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:77485400-77488000	Weak transcription	HepG2	liver
36	chr14:77485400-77490600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:77486600-77487000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:77486600-77487000	Enhancers	Stomach Mucosa	stomach

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