Variant report

Variant	rs61992404
Chromosome Location	chr14:42216799-42216800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:42211371..42213598-chr14:42216470..42218626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258536	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1597049	1.00[ASN][1000 genomes]
rs17112192	0.94[ASN][1000 genomes]
rs17181601	1.00[ASN][1000 genomes]
rs17181608	1.00[ASN][1000 genomes]
rs17181615	1.00[ASN][1000 genomes]
rs17181622	1.00[ASN][1000 genomes]
rs17181636	1.00[ASN][1000 genomes]
rs17781361	1.00[ASN][1000 genomes]
rs34543976	0.82[AMR][1000 genomes]
rs4584739	1.00[ASN][1000 genomes]
rs4586337	1.00[ASN][1000 genomes]
rs4603462	1.00[ASN][1000 genomes]
rs4624078	1.00[ASN][1000 genomes]
rs55718011	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56084127	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57676929	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57774630	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58644188	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58694176	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58922111	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59082466	1.00[ASN][1000 genomes]
rs59348864	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59496647	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60296848	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61990335	0.94[ASN][1000 genomes]
rs61990338	0.88[ASN][1000 genomes]
rs61990339	1.00[ASN][1000 genomes]
rs61990342	0.88[ASN][1000 genomes]
rs61990343	1.00[ASN][1000 genomes]
rs61990345	1.00[ASN][1000 genomes]
rs61990347	1.00[ASN][1000 genomes]
rs61990349	1.00[ASN][1000 genomes]
rs61992395	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61992396	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61992397	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61992398	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61992399	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61992400	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61992433	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72686527	1.00[ASN][1000 genomes]
rs72686528	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2758353	chr14:42045873-42259511	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759983	chr14:42045873-42259511	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv901738	chr14:42145461-42302552	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901739	chr14:42194373-42270916	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42212400-42217800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:42212400-42218200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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