Variant report

Variant	rs61995000
Chromosome Location	chr14:63862150-63862151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10129511	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10131511	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10135461	0.82[EUR][1000 genomes]
rs10139582	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10139766	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10142913	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10144281	0.80[ASN][1000 genomes]
rs10150042	0.82[EUR][1000 genomes]
rs11624328	0.82[EUR][1000 genomes]
rs12323683	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1475038	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2144965	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28409133	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28482044	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3742625	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3829766	0.80[EUR][1000 genomes]
rs58330493	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs60749050	0.90[AMR][1000 genomes]
rs61995003	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv431011	chr14:63743247-63866686	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv832815	chr14:63750058-63913900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051684	chr14:63752916-63867677	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2751279	chr14:63754363-63871416	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2751281	chr14:63758432-63866686	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1041108	chr14:63765661-63864885	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2761522	chr14:63765673-63867689	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1054848	chr14:63775037-63864885	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1044094	chr14:63775037-63865925	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv1039158	chr14:63775037-63866686	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv1036375	chr14:63775037-63867296	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv1050897	chr14:63775037-63867677	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv1049638	chr14:63776289-63867296	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	nsv902018	chr14:63786658-63884984	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	esv3420283	chr14:63861424-63863972	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv3362663	chr14:63861449-63864172	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv3371373	chr14:63861849-63863647	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61995000	KRCC1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63830800-63867000	Weak transcription	Fetal Heart	heart
2	chr14:63835000-63863800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:63837800-63902200	Weak transcription	Small Intestine	intestine
4	chr14:63839400-63862200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:63840000-63864000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:63841800-63871800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:63843200-63898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:63846200-63862600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:63846200-63862600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:63846400-63862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr14:63846400-63863600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:63846400-63867400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:63847200-63862400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:63849000-63868400	Weak transcription	Psoas Muscle	Psoas
15	chr14:63849000-63888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:63849200-63863600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:63851000-63863200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr14:63851000-63863800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:63851000-63871600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:63851200-63886000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:63851200-63902400	Weak transcription	Right Ventricle	heart
22	chr14:63851200-63903600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:63851200-63922000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:63851600-63866800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr14:63851800-63863400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr14:63851800-63869000	Strong transcription	Primary B cells from cord blood	blood
27	chr14:63852400-63882200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:63852600-63877000	Weak transcription	Spleen	Spleen
29	chr14:63852600-63899000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:63853200-63862600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:63853200-63886600	Weak transcription	NH-A	brain
32	chr14:63853800-63867600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:63854000-63893400	Weak transcription	Fetal Brain Male	brain
34	chr14:63854600-63872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr14:63854800-63867800	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:63854800-63871000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:63854800-63871200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:63854800-63922400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:63855000-63864000	Weak transcription	Colonic Mucosa	Colon
40	chr14:63855000-63886000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:63855400-63873200	Weak transcription	Fetal Kidney	kidney
42	chr14:63855600-63869800	Weak transcription	Brain Anterior Caudate	brain
43	chr14:63855800-63870600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:63856200-63869800	Weak transcription	Ovary	ovary
45	chr14:63856200-63883000	Weak transcription	K562	blood
46	chr14:63857000-63863000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:63857600-63862400	Strong transcription	Adipose Nuclei	Adipose
48	chr14:63858000-63863000	Weak transcription	A549	lung
49	chr14:63858000-63868200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr14:63858000-63871600	Weak transcription	Brain Germinal Matrix	brain

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