Variant report

Variant	rs61995699
Chromosome Location	chr5:27818189-27818190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2623550	1.00[EUR][1000 genomes]
rs2623553	1.00[EUR][1000 genomes]
rs2623700	1.00[EUR][1000 genomes]
rs2623715	1.00[EUR][1000 genomes]
rs2623742	1.00[EUR][1000 genomes]
rs2623758	1.00[EUR][1000 genomes]
rs2623759	1.00[EUR][1000 genomes]
rs2720804	1.00[EUR][1000 genomes]
rs2720808	1.00[EUR][1000 genomes]
rs2720821	1.00[EUR][1000 genomes]
rs2720837	1.00[EUR][1000 genomes]
rs2720839	1.00[EUR][1000 genomes]
rs4376516	1.00[EUR][1000 genomes]
rs55682773	1.00[EUR][1000 genomes]
rs60221341	1.00[EUR][1000 genomes]
rs60996915	1.00[EUR][1000 genomes]
rs7816761	1.00[EUR][1000 genomes]
rs7830762	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880292	chr5:27560226-27846167	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv880655	chr5:27583734-27932380	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv881573	chr5:27684515-27824645	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv597699	chr5:27770554-28261961	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1024182	chr5:27785956-28240940	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537706	chr5:27785956-28240940	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv597700	chr5:27792192-28387115	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27817400-27818200	Enhancers	Fetal Lung	lung
2	chr5:27818000-27818200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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