The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs62000981
Chromosome Location
chr10:25941884-25941885
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:4)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:4 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-GPR158-2
chr10:25941797-25941971
NONHSAT011809
2
lnc-GPR158-2
chr10:25941798-25941971
XLOC_008416
3
lnc-GPR158-2
chr10:25941798-25941971
NR_108069
4
lnc-GPR158-2
chr10:25941798-25941971
NR_108067
No data
No data
No data
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:1)
rs_ID
r
2
[population]
rs11014670
1.00[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv3349863
chr10:25614571-25946379
Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
6 gene(s)
inside rSNPs
diseases
2
nsv1044482
chr10:25889919-25977270
Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNA
6 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links