Variant report

Variant	rs62001853
Chromosome Location	chr15:32961916-32961917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:32961256-32963463	SK-N-SH	brain:	n/a	chr15:32962659-32962669 chr15:32962705-32962719 chr15:32962286-32962296 chr15:32962038-32962048 chr15:32962051-32962061
2	STAT3	chr15:32961552-32962122	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:32960265..32963015-chr15:33359103..33361723,2	MCF-7	breast:

Variant related genes	Relation type
SCG5	TF binding region
ENSG00000241818	TF binding region
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12050625	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431374	chr15:32008985-32976055	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv1822680	chr15:32403895-32962148	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv469587	chr15:32821940-32986579	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv482780	chr15:32821940-32986579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32934400-32962200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:32944600-32962200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:32951000-32967400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr15:32952200-32972800	Weak transcription	Fetal Brain Female	brain
5	chr15:32952600-32962000	Weak transcription	A549	lung
6	chr15:32952800-32962200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:32952800-32962400	Weak transcription	Esophagus	oesophagus
8	chr15:32952800-32967000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:32953000-32962200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:32953000-32962200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:32953000-32962200	Weak transcription	HMEC	breast
12	chr15:32953000-32962200	Weak transcription	NHEK	skin
13	chr15:32953000-32967200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:32956200-32973800	Weak transcription	HSMM	muscle
15	chr15:32956400-32962200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:32957000-32968400	Weak transcription	Brain Germinal Matrix	brain
17	chr15:32958000-32962000	Weak transcription	NHLF	lung
18	chr15:32960400-32962200	Enhancers	Brain Cingulate Gyrus	brain
19	chr15:32960400-32963200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:32960400-32963400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr15:32960600-32962000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr15:32960600-32962200	Enhancers	Brain Substantia Nigra	brain
23	chr15:32960600-32962200	Enhancers	NHDF-Ad	bronchial
24	chr15:32960600-32962600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr15:32960600-32963000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr15:32960600-32963200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr15:32960600-32963400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr15:32960600-32963400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr15:32960800-32962200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:32960800-32962200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:32960800-32962200	Enhancers	Brain Angular Gyrus	brain
32	chr15:32960800-32962200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr15:32960800-32962800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:32961000-32962200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:32961000-32962200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:32961000-32962200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:32961000-32963800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr15:32961000-32963800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr15:32961000-32964000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:32961000-32966800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:32961200-32962200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr15:32961200-32962200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:32961200-32962200	Enhancers	Brain Hippocampus Middle	brain
44	chr15:32961200-32962200	Enhancers	Osteobl	bone
45	chr15:32961200-32962400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:32961200-32964000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:32961200-32976200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:32961200-32980200	Weak transcription	Thymus	Thymus
49	chr15:32961400-32962200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:32961400-32962200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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