Variant report

Variant	rs62002440
Chromosome Location	chr15:39985914-39985915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39984467..39987996-chr15:40003626..40006912,3	K562	blood:
2	chr15:39984161..39987304-chr15:39989320..39992486,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11855802	1.00[AFR][1000 genomes]
rs62002387	1.00[AFR][1000 genomes]
rs62002390	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39977200-39990600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:39982800-39986200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:39982800-39986400	Enhancers	Brain Germinal Matrix	brain
4	chr15:39983000-39989800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:39983200-39990800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:39983600-39986200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:39983800-39987200	Weak transcription	K562	blood
8	chr15:39984200-39986200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:39984800-39986200	Enhancers	Fetal Intestine Large	intestine
10	chr15:39985000-39986200	Enhancers	Fetal Intestine Small	intestine
11	chr15:39985200-39988200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:39985400-39986000	Enhancers	Colon Smooth Muscle	Colon
13	chr15:39985600-39987600	Weak transcription	NHDF-Ad	bronchial
14	chr15:39985600-39989400	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:39985600-39996600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:39985800-39986000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:39985800-39986000	Enhancers	Rectal Smooth Muscle	rectum
18	chr15:39985800-39988800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:39985800-39992000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:39985800-39992200	Weak transcription	Fetal Lung	lung
21	chr15:39985800-39996400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:39985800-39996600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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