Variant report

Variant	rs62009331
Chromosome Location	chr15:78438063-78438064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78436066..78438607-chr15:78439895..78441680,2	K562	blood:
2	chr15:78437153..78440009-chr15:78444178..78446804,3	MCF-7	breast:
3	chr15:78437349..78439944-chr15:78555293..78556889,2	MCF-7	breast:
4	chr15:78437651..78440580-chr15:78459542..78461046,2	MCF-7	breast:
5	chr15:78437413..78439918-chr15:78471623..78473708,2	K562	blood:
6	chr15:78426055..78428346-chr15:78436183..78438129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140403	Chromatin interaction
ENSG00000103740	Chromatin interaction
ENSG00000166411	Chromatin interaction
ENSG00000259708	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11854120	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17850483	0.92[EUR][1000 genomes]
rs3825847	0.92[EUR][1000 genomes]
rs45444496	0.90[ASN][1000 genomes]
rs4570804	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57867560	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62009333	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62009334	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62009335	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62009336	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62009337	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62009339	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62009340	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62009341	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62009342	0.92[EUR][1000 genomes]
rs62009343	0.92[EUR][1000 genomes]
rs62009344	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62009346	0.90[ASN][1000 genomes]
rs62009347	0.82[EUR][1000 genomes]
rs62009348	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78424600-78440800	Weak transcription	HSMMtube	muscle
2	chr15:78425000-78440600	Weak transcription	Fetal Stomach	stomach
3	chr15:78426000-78440200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:78427200-78438600	Weak transcription	Placenta	Placenta
5	chr15:78427200-78439200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:78432600-78440200	Weak transcription	Small Intestine	intestine
7	chr15:78433000-78440600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:78433600-78440400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:78433800-78440200	Weak transcription	Right Ventricle	heart
10	chr15:78434000-78439800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:78434800-78439200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:78435200-78438600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:78435200-78438800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:78435200-78438800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:78435200-78440400	Weak transcription	HepG2	liver
16	chr15:78435400-78438400	Weak transcription	Fetal Intestine Large	intestine
17	chr15:78435400-78438400	Weak transcription	Fetal Intestine Small	intestine
18	chr15:78436000-78440600	Weak transcription	Thymus	Thymus
19	chr15:78437000-78440000	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:78437600-78438400	Weak transcription	Adipose Nuclei	Adipose
21	chr15:78437600-78440600	Weak transcription	HSMM	muscle

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